View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_139 (Length: 303)
Name: NF10140A_low_139
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_139 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 22659720 - 22659782
Alignment:
| Q |
9 |
tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcatttagcttgtac |
71 |
Q |
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| T |
22659720 |
tggtgttcttcctcgattttttcaagtaaatttgattccatcttttctgcatttagcttgtac |
22659782 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 22659883 - 22660005
Alignment:
| Q |
169 |
tagagaatattttgtttgttatttgtcggtcaaagggtaaaggctactaaagccctcacattaggcctacaaacnnnnnnnnnnnnngtatttttcatta |
268 |
Q |
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| T |
22659883 |
tagaggatattttttttgttatttgtcggtcaaagggt-aaggctattaaagccgtcacattaggcctacaaac----aaaaaaaaagtatttttcatta |
22659977 |
T |
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| Q |
269 |
aattttatgagaaaaatggtattctatg |
296 |
Q |
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| T |
22659978 |
aattttatgagaaaaatggtattttatg |
22660005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 28967870 - 28967923
Alignment:
| Q |
9 |
tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcattt |
62 |
Q |
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||||||||||||| |||| |||||||||| |||||| ||| |||||||||||| |
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| T |
28967870 |
tggtgttcttcctatatttcttcaagtaaacttgatttcattttttctgcattt |
28967923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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