View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_14 (Length: 446)

Name: NF10140A_low_14
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_14
NF10140A_low_14
[»] chr6 (2 HSPs)
chr6 (207-446)||(34691008-34691247)
chr6 (20-142)||(34690822-34690944)
[»] chr2 (11 HSPs)
chr2 (207-446)||(26988933-26989172)
chr2 (20-142)||(26988746-26988868)
chr2 (20-86)||(27076447-27076513)
chr2 (20-103)||(21432814-21432896)
chr2 (30-86)||(27028074-27028130)
chr2 (20-84)||(27099551-27099615)
chr2 (22-80)||(27151628-27151687)
chr2 (262-342)||(27028148-27028237)
chr2 (310-350)||(27076180-27076220)
chr2 (258-310)||(27076251-27076303)
chr2 (393-441)||(27076108-27076156)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 34691008 - 34691247
Alignment:
Q  207 cattgtaacttactgtcatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691008 cattgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 34691107  T
Q  307 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691108 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 34691207  T
Q  407 tcgtgttctttggttgctaaaagacagatatcattatatt 446  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  34691208 tcgtgttctttggttgctaaaagacagatatcattgtatt 34691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 34690822 - 34690944
Alignment:
Q  20 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690822 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 34690921  T
Q  120 gtcattattagtatttattagaa 142  Q
    |||||||||||||||||||||||    
T  34690922 gtcattattagtatttattagaa 34690944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 26988933 - 26989172
Alignment:
Q  207 cattgtaacttactgtcatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988933 cattgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 26989032  T
Q  307 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 406  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26989033 ttgcagttgtgtctgttaaatgcttttggaaagtttgcaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 26989132  T
Q  407 tcgtgttctttggttgctaaaagacagatatcattatatt 446  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  26989133 tcgtgttctttggttgctaaaagacagatatcattgtatt 26989172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 26988746 - 26988868
Alignment:
Q  20 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988746 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 26988845  T
Q  120 gtcattattagtatttattagaa 142  Q
    ||||| |||||||||||||||||    
T  26988846 gtcataattagtatttattagaa 26988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 27076513 - 27076447
Alignment:
Q  20 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 86  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27076513 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggtaat 27076447  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 21432814 - 21432896
Alignment:
Q  20 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcacc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||| |||||||    
T  21432814 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatgcacc 21432896  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 27028074 - 27028130
Alignment:
Q  30 cgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 86  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27028074 cgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 27028130  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 27099615 - 27099551
Alignment:
Q  20 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggta 84  Q
    ||||||||||| ||||| |||| |||||||||| || |||||| |||||||||||||||||||||    
T  27099615 ttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggta 27099551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 27151628 - 27151687
Alignment:
Q  22 cccttcatcgtttgagccc-agaagaaatgcatttaaaaacccatacagattctctagaa 80  Q
    ||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  27151628 cccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaa 27151687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 27028148 - 27028237
Alignment:
Q  262 ttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc---------agttgtgtctgttaaatgcttttggaaagctt 342  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||         |||| ||| |||||||||||||||||||||||    
T  27028148 ttttgctgaaagcgtgaaatgctggcattatacagctttcttggtttgctagtgtcttagttatgtttgttaaatgcttttggaaagctt 27028237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 27076220 - 27076180
Alignment:
Q  310 cagttgtgtctgttaaatgcttttggaaagcttacaacaag 350  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  27076220 cagttgtgtttgttaaatgcttttggaaagcttgcaacaag 27076180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 27076303 - 27076251
Alignment:
Q  258 catcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc 310  Q
    ||||||||||||||||  | ||| || ||||||||||||||||||||||||||    
T  27076303 catcttttgctgaaagcgtgaaacgcaggcattatacagctttcttggtttgc 27076251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 27076156 - 27076108
Alignment:
Q  393 gaataaacattcgttcgtgttctttggttgctaaaagacagatatcatt 441  Q
    ||||||||| | |||| |||| |||||||||||||||||| ||||||||    
T  27076156 gaataaacagttgttcatgttatttggttgctaaaagacatatatcatt 27076108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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