View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_140 (Length: 301)

Name: NF10140A_low_140
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_140
NF10140A_low_140
[»] chr3 (6 HSPs)
chr3 (4-301)||(19199131-19199429)
chr3 (31-241)||(6777837-6778048)
chr3 (16-232)||(1596237-1596454)
chr3 (16-232)||(34437781-34437997)
chr3 (245-292)||(34437674-34437721)
chr3 (27-116)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (14-237)||(43782700-43782924)
chr1 (16-232)||(48999827-49000044)
chr1 (16-237)||(45152677-45152899)
chr1 (16-156)||(40553596-40553736)
chr1 (4-241)||(3375894-3376131)
chr1 (27-156)||(33297214-33297343)
chr1 (245-297)||(45152954-45153005)
chr1 (243-293)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-237)||(180324-180558)
[»] chr7 (3 HSPs)
chr7 (16-235)||(12627421-12627641)
chr7 (4-242)||(1326840-1327079)
chr7 (25-156)||(38457493-38457624)
[»] chr5 (9 HSPs)
chr5 (52-235)||(26653528-26653712)
chr5 (52-235)||(26925113-26925297)
chr5 (26-232)||(13274093-13274300)
chr5 (16-156)||(2742997-2743137)
chr5 (100-156)||(21101423-21101479)
chr5 (27-148)||(24209211-24209332)
chr5 (245-301)||(26653769-26653825)
chr5 (245-301)||(26925354-26925410)
chr5 (245-300)||(21101616-21101672)
[»] chr8 (3 HSPs)
chr8 (16-241)||(37227721-37227947)
chr8 (25-171)||(14096700-14096846)
chr8 (245-292)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (25-241)||(31116886-31117103)
chr2 (4-135)||(28035635-28035766)
chr2 (245-292)||(28035925-28035972)
chr2 (245-293)||(31116787-31116835)
[»] chr4 (11 HSPs)
chr4 (25-147)||(25147344-25147466)
chr4 (16-232)||(42705139-42705356)
chr4 (15-156)||(39465347-39465486)
chr4 (237-292)||(3681088-3681143)
chr4 (245-292)||(25147612-25147659)
chr4 (245-292)||(32305590-32305637)
chr4 (245-292)||(39465623-39465670)
chr4 (16-122)||(32307880-32307986)
chr4 (16-109)||(3680825-3680918)
chr4 (119-156)||(32305774-32305811)
chr4 (245-289)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (25-236)||(16977-17192)
scaffold0251 (245-292)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (25-171)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (16-156)||(6285814-6285954)
chr6 (52-169)||(35014337-35014454)
chr6 (27-117)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (85-156)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (27-125)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 301
Target Start/End: Original strand, 19199131 - 19199429
Alignment:
4 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 103  Q
    ||||||||| |||||||||||||||| || |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
19199131 agagacaacgagacattacgtccttttagaacatatgctagtgctccggatggatcatggccggcaaatacaagagggtatgtcacttgccagagtgggt 19199230  T
104 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 202  Q
    | ||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
19199231 tcttaggcagtactagtatgtccaaactgttcccaggcctcctacaaacattgggcctcttacggcaggggacgtggttatggccttcgcagagtttgct 19199330  T
203 ctacatgccctcagccagcaggagaggggtgatctagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 301  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
19199331 ctacatgtcctcagccagtaggagaggggtgatctatttttgtagagtatcacatcctattatgaacccccctgcgtccattcctgactacacagttga 19199429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 6777837 - 6778048
Alignment:
31 aggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagac 130  Q
    |||||||||||| || |||  ||||||||||||||| |||  ||| || |||  ||||||||| | || ||||| |||||||||||| ||||||| ||||    
6777837 aggacatatgctggtgctccggatggatcatggccgacaacgacaggatggtccgtcacttgctagagagggttcttaggcagtacgggtatgtccagac 6777936  T
131 tattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagagg 229  Q
    |||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   ||||||| | |||||| ||||||||| ||||||||| ||| |||||    
6777937 tattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcacggagtttgctctacatgtcctcagccatcagcagagg 6778036  T
230 ggtgatctagtt 241  Q
    ||||||| ||||    
6778037 ggtgatccagtt 6778048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 1596454 - 1596237
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||||| |||   ||| || |||  ||||||||||| || ||||| ||||||||||    
1596454 acatcacgccctttcaggacatatgctggtactccggatggatcatggccagcagcgacaggatggtccgtcacttgccaaagcgggttcttaggcagta 1596355  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 214  Q
    |  ||||||| |||||||||  ||| ||||||||||||||| || | || ||||||  ||||| ||   |||||||   |||||| ||||||||| ||||    
1596354 caggtatgtccagactattctgagggctcctacagacattgagcttattgcggcagatgacgtggcccaggccttcatggagtttgctctacatgtcctc 1596255  T
215 agccagcaggagaggggt 232  Q
    | ||| ||| ||||||||    
1596254 acccatcagcagaggggt 1596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 34437997 - 34437781
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||| ||| |    || || |||  |||| || ||| || ||||| ||||||||||    
34437997 acatcacgccctttcaggacatatgctggtactccggatggatcatggtcggtagtggcaggatggtccgtcaatttccagagcgggttcttaggcagta 34437898  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 214  Q
    || ||||||  |||||||||||||| ||||||| ||||||| || | || |||| |  ||||| || | || |||| | |||||| ||||||||| ||||    
34437897 cgggtatgtacagactattcccagggctcctactgacattgagcttattgcggcggatgacgtggcca-ggtcttcacggagtttgctctacatgtcctc 34437799  T
215 agccagcaggagaggggt 232  Q
    ||||| ||||| ||||||    
34437798 agccatcaggataggggt 34437781  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 34437721 - 34437674
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
34437721 tagagtatcacatcctattgtgaacctccctgcgcccattcctgacta 34437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 21565966 - 21566054
Alignment:
27 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtac 116  Q
    ||||||||| | |||| ||||||| ||||||||||||||| |||| | |||| ||| |||||||||||  || ||||| | |||||||||    
21565966 tttcaggacgtgtgct-gtactctggatggatcatggccgacaaacaaaagatggtgtgtcacttgcccgagcgggttctgaggcagtac 21566054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 43782924 - 43782700
Alignment:
14 agacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcag 113  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |||||| |||||||||||| || | ||| |||||||     
43782924 agacattacgccctttcacgacatatgctagtactctggatggatcatggtcggcaaagacatgagggtctgtcacttgccagagcgagttcttaggcaa 43782825  T
114 tacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccc 212  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||| || || ||||||| |||||||||| |   |||||| ||||||||| ||    
43782824 tacgagtatgtccagactatacccatgcctcctacagacattgggcctcttgcgtcaagggacgtggctatggcctccatggagtttgctctacatgtcc 43782725  T
213 tcagccagcaggagaggggtgatct 237  Q
    |||||||||||||||||||||||||    
43782724 tcagccagcaggagaggggtgatct 43782700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 48999827 - 49000044
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| |||||||||||||||||| ||||||  |||||||||||||||||||  ||| || |||  ||||||||||| || ||||| ||||||||||    
48999827 acatcacgccctttcaggacatatgctggtactccggatggatcatggccggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagta 48999926  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 214  Q
    || |||||||||||||||||||||| ||||||||||||||| || | || |||| |  ||||| |||  ||||||| | |||||| ||||||||| ||||    
48999927 cgggtatgtctagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggctcaggccttcacggagtttgctctacatgtcctc 49000026  T
215 agccagcaggagaggggt 232  Q
    ||||| ||||| ||||||    
49000027 agccatcaggataggggt 49000044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 45152677 - 45152899
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| |||||||||||||||| | |||||| ||||||||||||||||||||| ||| | ||||   | |||||| | || ||||| |||||||||     
45152677 acatcacgccctttcaggacatatgttggtactccagatggatcatggccggcaaagacatgcgggttcattacttgctagagcgggttcttaggcagtt 45152776  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 214  Q
    || ||||||| ||||| |||| |||| |||||||||||||||||||||| || ||| ||| || ||||||||||||   |||||| |||||||||  |||    
45152777 cgggtatgtccagactgttcctaggcatcctacagacattgggcctcttgcgacagcggatgtggctatggccttcatggagtttgctctacatgttctc 45152876  T
215 agccagcaggagaggggtgatct 237  Q
    ||||| | ||||| |||||||||    
45152877 agccaactggagatgggtgatct 45152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 40553736 - 40553596
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| ||||||| |||||||||| ||||||  ||||||||||||||||||   ||| || |||  ||||||||||| || ||||| ||||||||||    
40553736 acatcacgccctttcatgacatatgctggtactccggatggatcatggccggcagcgacaggatggtccgtcacttgccagagcgggttcttaggcagta 40553637  T
116 cgagtatgtctagactattcccaggcctcctacagacattg 156  Q
    |||||||||| |||||||||||||| |||||||||||||||    
40553636 cgagtatgtccagactattcccagggctcctacagacattg 40553596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 3376131 - 3375894
Alignment:
4 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 103  Q
    |||||| || ||||||  || |||||||||||||||  | ||||||  |||||||||||||||| | | ||| || |||  ||||||||||| || ||||    
3376131 agagacgacgagacatggcgccctttcaggacatattttggtactccggatggatcatggccggtagagacaggatggtccgtcacttgccagagcgggt 3376032  T
104 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttct 202  Q
    | ||||||| |||  ||||||| |||||  ||||||  |||||||||| ||||||||||||  | ||| ||| || |||||| |||||   ||| |||||    
3376031 tcttaggcaatacatgtatgtccagactggtcccagagctcctacagatattgggcctcttgtgccagaggaggtggctatgaccttcatggagttttct 3375932  T
203 ctacatgccctcagccagcaggagaggggtgatctagtt 241  Q
    ||||||| ||||||||||||||||| |||||||||||||    
3375931 ctacatgtcctcagccagcaggaga-gggtgatctagtt 3375894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 33297343 - 33297214
Alignment:
27 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 126  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||   ||| || |||  ||||||||||| || ||||| |||||||||||| ||||| |     
33297343 tttcaggacatatgctggtactccggatggatcatggccgacagcgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgacc 33297244  T
127 agactattcccaggcctcctacagacattg 156  Q
    |||||||||||||| |||||||||||||||    
33297243 agactattcccagggctcctacagacattg 33297214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 45152954 - 45153005
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacag 297  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||||||    
45152954 tagagtatcacatcctattgtgaacc-ccctgcggccattcctgactacacag 45153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 3375845 - 3375795
Alignment:
243 tgtagagtatcacatcctattatgaacctccatgcgtccattcctgactac 293  Q
    ||||||||| ||||||||||| |||||| || |||| ||||||||||||||    
3375845 tgtagagtagcacatcctattgtgaacccccctgcggccattcctgactac 3375795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 180558 - 180324
Alignment:
4 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 103  Q
    |||||| || |||||||| | |||||||||||||||| | ||||||  ||||||||||||||| |||| ||| |||||| |||||||||||| || ||||    
180558 agagacgacgagacattatgccctttcaggacatatgttggtactccggatggatcatggccgccaaagacaggagggtctgtcacttgccagagcgggt 180459  T
104 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 202  Q
    | |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||| | |||||| |||||   |||||| ||    
180458 tcttaggcagtacgggtatgtctagactgttcccaggcctcctacaaacattgggcctcttgtggcaggggacatggctatgaccttcatggagtttgct 180359  T
203 ctacatgccctcagccagcaggagaggggtgatct 237  Q
    ||||||| |||||||||||||||||||||||||||    
180358 ctacatgtcctcagccagcaggagaggggtgatct 180324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 12627421 - 12627641
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||| ||| || |||  ||||||||||| |||||||| ||| ||||||    
12627421 acatgacgcccttttaggacatatggtggtactctagatggatcatggccggcaaagacaggatggttcgtcacttgccagagtgggttcttatgcagta 12627520  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctc 214  Q
    |  ||||| | ||||| |||||||||||||||||||||||||| || || || ||| ||  || ||||||||||||   ||| |||||||||||| ||||    
12627521 caggtatgcccagactgttcccaggcctcctacagacattgggactgttgcgccagaggcggtggctatggccttcatggagttttctctacatgtcctc 12627620  T
215 agccagcaggagaggggtgat 235  Q
    ||||| ||  |||||||||||    
12627621 agccaacaacagaggggtgat 12627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 1327079 - 1326840
Alignment:
4 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 103  Q
    |||||| || |||||||||  |||||||||||||||| | ||||||  |||||||||||||| ||| | ||||||||||  ||||||||||| |  |||     
1327079 agagacgacgagacattacaccctttcaggacatatgttggtactccggatggatcatggcctgcagagacaagagggtccgtcacttgccagaacggga 1326980  T
104 tattaggcagtacgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ct 202  Q
    | |||||||||| | ||||||| | | | ||| || ||||||||||||||||||||||||  || ||||||| || | || |||||||   |||||| ||    
1326979 ttttaggcagtatgggtatgtccaaattgttcacatgcctcctacagacattgggcctctggcgccaggggaggtggttacggccttcatggagtttgct 1326880  T
203 ctacatgccctcagccagcaggagaggggtgatctagttt 242  Q
    ||||||| ||||||||| ||||||||||||||||| ||||    
1326879 ctacatgtcctcagccaacaggagaggggtgatctggttt 1326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 38457493 - 38457624
Alignment:
25 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 124  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || |||  ||||||||||| ||| |||| |||||||||||| |||| |    
38457493 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacatgatggtccgtcacttgccagagttggttcttaggcagtacgggtatat 38457592  T
125 ctagactattcccaggcctcctacagacattg 156  Q
      |||||||||||||  |||||||||||||||    
38457593 tcagactattcccagcgctcctacagacattg 38457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 26653528 - 26653712
Alignment:
52 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 151  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
26653528 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26653627  T
152 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 235  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
26653628 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 26925113 - 26925297
Alignment:
52 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 151  Q
    |||||||||||||||||||  || ||||||| |||||||||||| |  ||||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |    
26925113 gatggatcatggccggcaatgactagagggtctgtcacttgccagaacgggttcttaggcagtacgggtatgtccagactattcccagaccttctacata 26925212  T
152 cattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcaggagaggggtgat 235  Q
    ||||||||||||| | | ||  ||||| || ||| ||||    |||||| ||||||||| ||||| |||||||||||||||||||    
26925213 cattgggcctcttgcagtagatgacgtggcaatgaccttgatggagtttgctctacatgtcctcaaccagcaggagaggggtgat 26925297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 13274093 - 13274300
Alignment:
26 ctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 125  Q
    |||| |||||||||||| |||||| |||||||||||||||||||   ||| ||  ||  ||||||||||| || ||||| |||||||||||| |||||||    
13274093 cttttaggacatatgctggtactccagatggatcatggccggcagcgacaggattgtccgtcacttgccagagcgggttcttaggcagtacgggtatgtc 13274192  T
126 tagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagag-tttctctacatgccctcagccagcagg 224  Q
     |||||||||||||| ||||||||| ||||| || | || |||  |  ||||| ||   ||||||| ||||| |||||||||||| ||||||||| ||||    
13274193 cagactattcccagggctcctacagccattgagcttattgcggtggatgacgtggcctaggccttcacagagttttctctacatgtcctcagccatcagg 13274292  T
225 agaggggt 232  Q
    | ||||||    
13274293 ataggggt 13274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 2742997 - 2743137
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| |||||||||||||||||| ||||||  ||||||||||| ||||||   ||| || |||   ||||||| || || ||||| ||||| ||||    
2742997 acatcacgccctttcaggacatatgctggtactccggatggatcatgaccggcagcgacaggatggtccatcacttgtcagagcgggttcttaggaagta 2743096  T
116 cgagtatgtctagactattcccaggcctcctacagacattg 156  Q
    || ||||||| | ||||||| |||| |||||||||||||||    
2743097 cgggtatgtccaaactattctcagggctcctacagacattg 2743137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 21101423 - 21101479
Alignment:
100 gggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 156  Q
    ||||| |||||||||||| ||||||| |||||||||| ||| |||||||||||||||    
21101423 gggttcttaggcagtacgtgtatgtccagactattcctagggctcctacagacattg 21101479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 24209332 - 24209211
Alignment:
27 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtct 126  Q
    |||| ||||||||||| ||||||  ||||||||||| ||| |||| ||| || |    ||||||||||| || ||||| | ||||||||||| |||| ||    
24209332 tttcgggacatatgctggtactccggatggatcatgaccgacaaagacaggatgtgccgtcacttgccagagcgggttctgaggcagtacgactatgcct 24209233  T
127 agactattcccaggcctcctac 148  Q
    |||| |||| ||| ||||||||    
24209232 agaccattcacagacctcctac 24209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 26653769 - 26653825
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 301  Q
    ||||||||||||||||||| |||||| || ||   ||||||||||||||||||||||    
26653769 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttga 26653825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 26925354 - 26925410
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgactacacagttga 301  Q
    ||||||||||||||||||| |||||| || ||   ||||||||||||||||||||||    
26925354 tagagtatcacatcctattgtgaacccccctgtagccattcctgactacacagttga 26925410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 21101616 - 21101672
Alignment:
245 tagagtatcacatcctattatgaacctccat-gcgtccattcctgactacacagttg 300  Q
    ||||||||| ||||||||| |||||| || | ||| |||||||||||||||||||||    
21101616 tagagtatcgcatcctattgtgaaccccccttgcggccattcctgactacacagttg 21101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 37227947 - 37227721
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| ||||| |||||||||||||||||||  ||||||||||||||| ||   ||| || |||   |||||||||| || ||||| ||||||||||    
37227947 acatcacgcccttttaggacatatgctagtactccggatggatcatggccgacatcgacaggatggtccctcacttgccagagcgggttcttaggcagta 37227848  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 214  Q
    || ||||||| |||||||||||||| ||||||||||||||| || | || |||| |  ||||| ||   ||||||| | |||||| ||||||||| ||||    
37227847 cgggtatgtccagactattcccagggctcctacagacattgagcttattgcggcggatgacgtggcccaggccttcacggagtttgctctacatgtcctc 37227748  T
215 agccagcaggagaggggtgatctagtt 241  Q
    ||||| || || |||||| ||| ||||    
37227747 agccatcaagataggggtcatccagtt 37227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 14096700 - 14096846
Alignment:
25 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 124  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||   |||  | |||  ||||||||||| || || || |||||||||||  ||||||    
14096700 cctttcaggacataagctagtactccagatggatcatggccgacagcgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgt 14096799  T
125 ctagactattcccaggcctcctacagacattgggcctcttacggcag 171  Q
    | |||||||||||  ||||||||||||||||| || |||| ||||||    
14096800 ccagactattcccttgcctcctacagacattgagcttcttgcggcag 14096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 37227670 - 37227623
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
37227670 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 37227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 31117103 - 31116886
Alignment:
25 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 124  Q
    |||||||||| ||||||| |||||   ||||||||||||||| || | | | || ||| |||||||||||| ||| |||| |||||||||||| ||||||    
31117103 cctttcaggatatatgctggtacttcggatggatcatggccgacagagataggatggtctgtcacttgccagagtcggttcttaggcagtacgggtatgt 31117004  T
125 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctcagccagcag 223  Q
    | ||||    |||||||||||||||||||||  ||||||||||||||  ||||| ||   | |||||  ||||||| ||||||||| ||||||||| |||    
31117003 ccagacacggcccaggcctcctacagacattaagcctcttacggcagatgacgtggcccagaccttcatagagtttgctctacatgtcctcagccatcag 31116904  T
224 gagaggggtgatctagtt 241  Q
     |||||||| ||| ||||    
31116903 cagaggggttatccagtt 31116886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 28035635 - 28035766
Alignment:
4 agagacaacaagacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggt 103  Q
    |||||| |||| |||| ||| ||||||| |||||||||| ||||||  ||| ||||||||||||||   ||| || |||  ||||||||| | || ||||    
28035635 agagacgacaacacatcacgccctttcaagacatatgctggtactccggatagatcatggccggcagcgacatgatggtccgtcacttgctagagcgggt 28035734  T
104 tattaggcagtacgagtatgtctagactattc 135  Q
    | |||||||||| | ||||||| |||||||||    
28035735 tcttaggcagtaggggtatgtccagactattc 28035766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 28035925 - 28035972
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||    
28035925 tagagtatcacatcctattgtgaacccccatgcggccattcctgacta 28035972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 31116835 - 31116787
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgactac 293  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||||||    
31116835 tagagtatcacatcctattgtgaacccccctgcggccattcctgactac 31116787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 25147344 - 25147466
Alignment:
25 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 124  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||   ||| || ||| |||||||||||| || ||||| |||||||||||| ||||||    
25147344 cctttcaggacatatgctggtactccggatggatcatggccggcagcgacaggatggtctgtcacttgccagagcgggttcttaggcagtacgggtatgt 25147443  T
125 ctagactattcccaggcctccta 147  Q
    | |||||||||||| | ||||||    
25147444 ccagactattcccatggctccta 25147466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 42705356 - 42705139
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| |||||||||||||||| | ||||||  |||||||||||| |||||   ||| || |||  ||||||||||| || ||||| ||||||||||    
42705356 acatcacgccctttcaggacatatgttggtactccggatggatcatgggcggcagcgacatgaaggtccgtcacttgccagagcgggttcttaggcagta 42705257  T
116 cgagtatgtctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtagctatggccttcgcagagttt-ctctacatgccctc 214  Q
    || | ||||| | |||||||||||| ||||||||||||||| || | || || |||  ||||| ||   ||||||| | |||||| ||||||||| ||||    
42705256 cgggcatgtccatactattcccagggctcctacagacattgagcttattgcgacagatgacgtggcccaggccttcacggagtttgctctacatgtcctc 42705157  T
215 agccagcaggagaggggt 232  Q
    ||||| ||| ||||||||    
42705156 agccatcagcagaggggt 42705139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 39465347 - 39465486
Alignment:
15 gacattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagt 114  Q
    ||||| ||| |||||||||||||||||||||||||  ||||||||||||||||||   ||| || |||  || |||||||| ||  |||| |||||||||    
39465347 gacatcacgccctttcaggacatatgctagtactccggatggatcatggccggcagcgacaggatggtccgtaacttgccagagccggttcttaggcagt 39465446  T
115 acgagtatgtctagactattcccaggcctcctacagacattg 156  Q
    | | |||||||  |||||||| |||| || ||||||||||||    
39465447 atgggtatgtc--gactattctcagggcttctacagacattg 39465486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 3681088 - 3681143
Alignment:
237 tagttttgtagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
3681088 tagttttttagagtatcacatcctattatgaacccccctgcgaccattcctgacta 3681143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 25147612 - 25147659
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
25147612 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 25147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 32305637 - 32305590
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| |||||| ||||| | |||||||||||||    
32305637 tagagtatcacatcctattgtgaacccccatgtggccattcctgacta 32305590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 39465623 - 39465670
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
39465623 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 39465670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 32307986 - 32307880
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| ||||| |||||||||||| ||||||  ||||||||||||||| ||   ||| || |||  ||||||||||  || ||||| ||||||||||    
32307986 acatcacgccctttgaggacatatgctggtactccggatggatcatggccgacagcgacaggatggtccgtcacttgcctgagcgggttcttaggcagta 32307887  T
116 cgagtat 122  Q
    || ||||    
32307886 cgggtat 32307880  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 3680825 - 3680918
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattag 109  Q
    |||| ||| ||||| |||||| || |||||||||  ||||||||||||||||||   |||||| |||  ||||||||||| || ||||| ||||    
3680825 acatcacgccctttgaggacacatactagtactccggatggatcatggccggcagcgacaagatggtccgtcacttgccagagcgggttcttag 3680918  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 32305811 - 32305774
Alignment:
119 gtatgtctagactattcccaggcctcctacagacattg 156  Q
    ||||||| |||||||||||||| |||||||||||||||    
32305811 gtatgtccagactattcccagggctcctacagacattg 32305774  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 42705079 - 42705035
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctga 289  Q
    ||||||||||||||||||| |||||| || |||| ||||||||||    
42705079 tagagtatcacatcctattgtgaacccccctgcggccattcctga 42705035  T

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Target: scaffold0251 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 17192 - 16977
Alignment:
25 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 124  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||   ||| || |||  ||||||| ||| || ||||| ||||| |||||| ||||||    
17192 cctttcaggacatatgctggtactctggatggatcatggccagcagcgacaggatggtccgtcactttccagagcgggttgttaggtagtacgggtatgt 17093  T
125 ctagactattcccaggcctcctacagacattgggcctcttacggcaggggacgtag-cta--tggccttcgcagagttt-ctctacatgccctcagccag 220  Q
    | |||||||||| ||| ||||||||||||||  || | || ||||||  ||| | | |||  || ||||| |||||||| ||||||||| |||||||||     
17092 ccagactattccgagggctcctacagacatttagcttattgcggcagatgacatggcctaggtgcccttcacagagtttgctctacatgtcctcagccat 16993  T
221 caggagaggggtgatc 236  Q
    ||| ||||||||||||    
16992 cagtagaggggtgatc 16977  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 16922 - 16875
Alignment:
245 tagagtatcacatcctattatgaacctccatgcgtccattcctgacta 292  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||    
16922 tagagtatcacatcctattgtgaacccccctgcggccattcctgacta 16875  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 7042 - 7188
Alignment:
25 cctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgt 124  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||   |||  | |||  ||||||||||| || || || |||||||||||  ||||||    
7042 cctttcaggacataagctagtactccagatggatcatggccgacagcgacataatggtccgtcacttgccagagcggtttcttaggcagtacaggtatgt 7141  T
125 ctagactattcccaggcctcctacagacattgggcctcttacggcag 171  Q
    | |||||||||||  ||||||||||||||||| || |||| ||||||    
7142 ccagactattcccttgcctcctacagacattgagcttcttgcggcag 7188  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 6285954 - 6285814
Alignment:
16 acattacgtcctttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagta 115  Q
    |||| ||| ||||| |||||||||||| |||||| ||||||||||||||  |||   | | || |||  |||||||| || || ||||| ||||||||||    
6285954 acatcacgccctttgaggacatatgctggtactccagatggatcatggctagcagcgataggatggtccgtcacttggcagagcgggttcttaggcagta 6285855  T
116 cgagtatgtctagactattcccaggcctcctacagacattg 156  Q
    || ||||||| |||||||||||||| |||||| ||||||||    
6285854 cgggtatgtccagactattcccagggctcctatagacattg 6285814  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 35014337 - 35014454
Alignment:
52 gatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacaga 151  Q
    |||||||||||| ||||||  ||| || |||  ||||||||||| || ||||| |||||||||||| ||||||| ||||||||| |||| ||| |||| |    
35014337 gatggatcatggtcggcaacgacaggatggtccgtcacttgccagagcgggttcttaggcagtacgggtatgtccagactattcacagggctcgtacata 35014436  T
152 cattgggcctcttacggc 169  Q
    ||||| || | |||||||    
35014437 cattgagcttattacggc 35014454  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 2029728 - 2029818
Alignment:
27 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacg 117  Q
    ||||||||| | |||| ||| ||| |||||||||||||||||||| | |||| |||  ||||||||||| || ||||| | ||||||||||    
2029728 tttcaggacgtgtgctggtattctggatggatcatggccggcaaacagaagatggtgcgtcacttgccagagcgggttctgaggcagtacg 2029818  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 257416 - 257345
Alignment:
85 gtcacttgccatagtgggttattaggcagtacgagtatgtctagactattcccaggcctcctacagacattg 156  Q
    ||||||||||| || ||||| ||||| |||||| ||||||| ||||||||| |||| |||| ||||||||||    
257416 gtcacttgccagagcgggttcttaggtagtacgggtatgtccagactattctcagggctcccacagacattg 257345  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 32451 - 32353
Alignment:
27 tttcaggacatatgctagtactctagatggatcatggccggcaaatacaagagggtatgtcacttgccatagtgggttattaggcagtacgagtatgtc 125  Q
    |||||||||||||||| |||||| |||||||||||||||  || | ||| || |||  ||||||||||| || ||||| ||||| |||||  |||||||    
32451 tttcaggacatatgctggtactccagatggatcatggccaacagagacatgatggtccgtcacttgccagagcgggttcttaggtagtacaggtatgtc 32353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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