View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_145 (Length: 298)
Name: NF10140A_low_145
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_145 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 20816552 - 20816837
Alignment:
| Q |
9 |
tcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816552 |
tcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactt |
20816651 |
T |
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| Q |
109 |
tatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816652 |
tatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgg |
20816751 |
T |
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| Q |
209 |
gtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
294 |
Q |
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| T |
20816752 |
gtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 38779594 - 38779308
Alignment:
| Q |
8 |
ttcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagact |
107 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||| |
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| T |
38779594 |
ttcgtgttgagtctttgttggtgtctccaatatcaaaagctagtgcacaccagaggtctggacgtgctggaagaactcagccggggaaatgctttagact |
38779495 |
T |
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| Q |
108 |
ttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattg |
207 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |
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| T |
38779494 |
ttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatcttgccaacacagttcttacattgaagaaactg |
38779395 |
T |
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| Q |
208 |
ggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
294 |
Q |
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|||||||| |||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||| |
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| T |
38779394 |
ggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtgctttggaagtgttgaattacttg |
38779308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 33388552 - 33388268
Alignment:
| Q |
9 |
tcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactt |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |||||||||| |||||| |
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| T |
33388552 |
tcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactc |
33388453 |
T |
|
| Q |
109 |
tatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgg |
208 |
Q |
| |
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||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| |
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| T |
33388452 |
tataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatcttgcaaacacggttcttacattgaagaaattgg |
33388353 |
T |
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| Q |
209 |
gtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattactt |
293 |
Q |
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||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
33388352 |
gtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgctttggaagtgttgaattactt |
33388268 |
T |
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