View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_149 (Length: 296)
Name: NF10140A_low_149
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_149 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0012 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 57451 - 57166
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
57451 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtcta |
57352 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
57351 |
atttattcaagaggcgatttttctcaaacggtcagccctccatgcgttattttaaatcctcggtttggtcgggtattaaaatacatattggcacggttat |
57252 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttga |
296 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57251 |
gagcaattcattgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttga |
57166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 21879596 - 21879311
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
21879596 |
gatgaaggtgggttagacatcaaacatacgtgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtcta |
21879497 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
21879496 |
atttattcaaaagaagatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttat |
21879397 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttga |
296 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
21879396 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttttggactgataattggctaggtgttcctcttgtggagttga |
21879311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 1926403 - 1926118
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||| |
|
|
| T |
1926403 |
gatgaaggtgggttagacatcaaaactacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggcaaacatagtggtctc |
1926304 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
1926303 |
atttattcaagaggcgatatttttcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttat |
1926204 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttga |
296 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
1926203 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtcgatttga |
1926118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 21811492 - 21811769
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
21811492 |
gatgaaggtgggttagacctcatgcctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctc |
21811591 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|| | ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
21811592 |
atcttttcaaaaggagatatttctcaaacggtcagccctccatgcactattttaaatcatccgtttggtcgggtattaaacttcatattggcacggttat |
21811691 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgt |
288 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21811692 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgt |
21811769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 29304668 - 29304501
Alignment:
| Q |
13 |
tgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtctaat |
112 |
Q |
| |
|
|||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| | ||||||| |||||||| | || || || ||||| ||| |
|
|
| T |
29304668 |
tgaaggtgggtttgatatcaagcctacgcgtttgattaacgaggctttgattcttaaattttcttgggatttaattgcaaaagatactcaatggtcgaat |
29304569 |
T |
|
| Q |
113 |
ttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtc |
180 |
Q |
| |
|
||||| |||| ||| ||||||||| | |||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
29304568 |
ttatttaagatgcgttatttctcacatggtcagcctagcaagcgctgttttaaatcctcggtttggtc |
29304501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 41345598 - 41345427
Alignment:
| Q |
8 |
tgagatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggt |
107 |
Q |
| |
|
|||| |||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| ||||| | ||||||| |||||||| | || || || |||| |
|
|
| T |
41345598 |
tgagctgaaggtgggtttgatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggt |
41345499 |
T |
|
| Q |
108 |
ctaatttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtc |
180 |
Q |
| |
|
| |||||||| |||| ||| ||||||||| | ||||| || || |||||||||||||||||| |||||||| |
|
|
| T |
41345498 |
cgaatttatttaagatgcgttatttctcacatggtca-cctagcaagcgctattttaaatcctcagtttggtc |
41345427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 21317 - 21040
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||| |
|
|
| T |
21317 |
gatgaaggtgggttagacttcatttctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggtaaacatagtggtctc |
21218 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||| ||||| ||| ||||||| |||||||||||||||||||||| |||||||||||| || |||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
21217 |
attttttcaataggtgatatttttcaaacggtcagccctccatgctctattttaaatcttctgtttggtcgggtattaaacttcatattggcacggttat |
21118 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgt |
288 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21117 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgt |
21040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 14350 - 14635
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14350 |
gatgaaggtgggttagatatcagacctacgcgattgattaatgaggctttaattctaaaattatcttgggatttaattgcacaggaaacacagtggtcta |
14449 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||| | || ||| || |||||||||||||| | |
|
|
| T |
14450 |
gtttattcaagcagctttatttctcaaatggtcggccctccatgcgctattttaaatcctcggtttggtcgggcattaaagtatatattggcacggtttt |
14549 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttga |
296 |
Q |
| |
|
||| ||| |||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
14550 |
gagcaattctttgtggattgttggagatggaaataatattaatttctggactgataattggttagatgatcctcttgtggatttga |
14635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 10137201 - 10137368
Alignment:
| Q |
13 |
tgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtctaat |
112 |
Q |
| |
|
|||||||| || |||||||||||||| | |||||||| || ||||| ||| | ||||| ||||||||| |||||||| | || ||||| |||||||| |
|
|
| T |
10137201 |
tgaaggtgttttggacatcaaacctacatgtttgattaatgaagctttgattattaaattgttttgggatttaattgcagaagatacacaatggtctaac |
10137300 |
T |
|
| Q |
113 |
ttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtc |
180 |
Q |
| |
|
||||||| ||| ||| ||||||| |||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
10137301 |
ttattcagattgcgttatctctcaaatggtcagccaagaaagcgctattttaagtcctcggtttggtc |
10137368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 20424785 - 20424952
Alignment:
| Q |
14 |
gaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgc-acaggaaacacagtggtctaat |
112 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| |||| | ||||||| || |||| ||| || || || |||||||| |
|
|
| T |
20424785 |
gaaggtgggttggatatcaagcctacgcgtttgattaacgaagctttgattcttaaatattcttgggatttacttgctaca-gatactcaatggtctaac |
20424883 |
T |
|
| Q |
113 |
ttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtca |
181 |
Q |
| |
|
| || |||||||| ||||||||||| ||| |||| | ||||||| |||||||| || ||||||||| |
|
|
| T |
20424884 |
cttttaaagaggcgttatttctcaaatggtaagcctagcttgcgctactttaaatcgtctgtttggtca |
20424952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 10610054 - 10609885
Alignment:
| Q |
13 |
tgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgc-acaggaaacacagtggtctaa |
111 |
Q |
| |
|
|||||||||| | || ||||| |||||||| ||| ||||||| ||||| ||| | ||||| | ||||||| ||||||| |||| | || || |||||||| |
|
|
| T |
10610054 |
tgaaggtgggctggatatcaagcctacgcgtttgtttaacgaagctttgattattaaattgtcttgggatttaattgctacag-atactcaatggtctaa |
10609956 |
T |
|
| Q |
112 |
tttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcag |
182 |
Q |
| |
|
| || |||||||| |||||| |||| ||| |||| | |||| |||||||| || ||||||||||||| |
|
|
| T |
10609955 |
ccttttaaagaggcgttatttcccaaatggtaagcctagcttgcgttattttaagtcttcggtttggtcag |
10609885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University