View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_150 (Length: 295)

Name: NF10140A_low_150
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_150
NF10140A_low_150
[»] chr1 (4 HSPs)
chr1 (25-288)||(29467152-29467415)
chr1 (23-256)||(29452676-29452909)
chr1 (26-233)||(29423828-29424035)
chr1 (23-240)||(29442684-29442901)
[»] chr2 (10 HSPs)
chr2 (24-257)||(14550910-14551143)
chr2 (155-257)||(12005616-12005718)
chr2 (156-257)||(12018381-12018482)
chr2 (155-251)||(11986979-11987075)
chr2 (158-253)||(12012047-12012142)
chr2 (24-79)||(8572827-8572882)
chr2 (199-233)||(8579035-8579069)
chr2 (200-254)||(9365188-9365242)
chr2 (199-253)||(10336378-10336432)
chr2 (24-76)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (203-243)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 29467152 - 29467415
Alignment:
Q  25 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467152 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 29467251  T
Q  125 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatcc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29467252 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatcc 29467351  T
Q  225 gtaaacatcagattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 288  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467352 gtaaacatcggattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 29467415  T

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Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 29452676 - 29452909
Alignment:
Q  23 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 122  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452676 caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 29452775  T
Q  123 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 222  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  29452776 ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttctggaaccctaacat 29452875  T
Q  223 ccgtaaacatcagattattcctaatctccctatt 256  Q
    |||||||||||||| |||||||||||||||||||    
T  29452876 ccgtaaacatcagaatattcctaatctccctatt 29452909  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 29424035 - 29423828
Alignment:
Q  26 aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 125  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | |||||||||||| |||||    
T  29424035 aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt 29423936  T
Q  126 tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccg 225  Q
    |||||  | |||||||||||||||||||| |||| ||||||||||||||||||||| | | | || |||  | ||||||||||||||| |||| |||| |    
T  29423935 tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttctggaaccctaccatctg 29423836  T
Q  226 taaacatc 233  Q
    ||||||||    
T  29423835 taaacatc 29423828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 29442684 - 29442901
Alignment:
Q  23 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 122  Q
    ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || ||||||||||  |||    
T  29442684 caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc 29442783  T
Q  123 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 222  Q
    |||||| |   |||| ||||  ||| |||||  | |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||    
T  29442784 ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 29442883  T
Q  223 ccgtaaacatcagattat 240  Q
    ||||||||| | ||||||    
T  29442884 ccgtaaacaccggattat 29442901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 14551143 - 14550910
Alignment:
Q  24 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 123  Q
    |||||||||||||| ||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551143 aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 14551044  T
Q  124 tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatc 223  Q
    |||| ||  |  ||||||||||||||||||| |||||||||||||||| ||||||| ||| |   |||||| || ||| ||||| ||||| |||||||||    
T  14551043 tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttatggaaccctaacatc 14550944  T
Q  224 cgtaaacatcagattattcctaatctccctattc 257  Q
    ||||||||||  ||||| ||| ||||||||||||    
T  14550943 cgtaaacatcgcattatccctgatctccctattc 14550910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 12005616 - 12005718
Alignment:
Q  155 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 254  Q
    |||||||||||||||||||| |||||||||||| |||| | || |||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  12005616 ttcggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctcccta 12005715  T
Q  255 ttc 257  Q
    |||    
T  12005716 ttc 12005718  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 12018381 - 12018482
Alignment:
Q  156 tcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccctat 255  Q
    ||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||| ||||||||||||||| |||||| ||| ||||||||||    
T  12018381 tcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctat 12018480  T
Q  256 tc 257  Q
    ||    
T  12018481 tc 12018482  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 11986979 - 11987075
Alignment:
Q  155 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcc 251  Q
    |||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||    
T  11986979 ttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctcc 11987075  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 12012047 - 12012142
Alignment:
Q  158 ggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 253  Q
    |||||||||||||||||  ||||||||||| | ||   || || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12012047 ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct 12012142  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
Q  24 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc 79  Q
    |||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  8572827 aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 8579035 - 8579069
Alignment:
Q  199 aatcgctttctggaatcctaacatccgtaaacatc 233  Q
    ||||||||||||||| |||||||||||||||||||    
T  8579035 aatcgctttctggaaccctaacatccgtaaacatc 8579069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 9365242 - 9365188
Alignment:
Q  200 atcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 254  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||| |||| ||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatcccttatcttccta 9365188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 10336432 - 10336378
Alignment:
Q  199 aatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 253  Q
    |||||| ||||| ||||||| |||||||||||||| |||||| ||| ||||||||    
T  10336432 aatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccct 10336378  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
Q  24 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 76  Q
    ||||||||||||| || | |||||||||||||||||| | |||| ||||||||    
T  9292751 aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 55718376 - 55718336
Alignment:
Q  203 gctttctggaatcctaacatccgtaaacatcagattattcc 243  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  55718376 gctttctggaatcctacgatccgtaaacatcggattattcc 55718336  T

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