View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_152 (Length: 294)
Name: NF10140A_low_152
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_152 |
 | |
|
| [»] scaffold0279 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0279 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 21307 - 21553
Alignment:
| Q |
1 |
gtctaataatttggcaatatgtttgttaaagattcttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21307 |
gtctaataatttggcaatatgtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagc |
21406 |
T |
|
| Q |
101 |
tgttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21407 |
tgttgtgttccttaatagaggcccacagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagac |
21506 |
T |
|
| Q |
201 |
ctttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21507 |
ctttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
21553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27527426 - 27527672
Alignment:
| Q |
1 |
gtctaataatttggcaatatgtttgttaaagattcttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527426 |
gtctaataatttggcaatatgtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagc |
27527525 |
T |
|
| Q |
101 |
tgttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527526 |
tgttgtgttccttaatagaggcccacagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagac |
27527625 |
T |
|
| Q |
201 |
ctttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27527626 |
ctttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
27527672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 27533152 - 27533396
Alignment:
| Q |
3 |
ctaataatttggcaatatgtttgttaaagattcttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctg |
102 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
27533152 |
ctaataatttggcactatgtttattaaagatttttgttcttatctgcatgttttgttggatagatatgggcaggtcctctttcaggatatagggtagctg |
27533251 |
T |
|
| Q |
103 |
ttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacct |
202 |
Q |
| |
|
||||||| ||||||| |||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27533252 |
ttgtgttgcttaataaaggcactcagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacct |
27533351 |
T |
|
| Q |
203 |
ttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27533352 |
ttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
27533396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University