View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_154 (Length: 293)
Name: NF10140A_low_154
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_154 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 52584622 - 52584902
Alignment:
| Q |
1 |
tcattaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtattgtgtcccttaagggaacaactc |
100 |
Q |
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| T |
52584622 |
tcattaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtattgtgtcccttaagggaacaactc |
52584721 |
T |
|
| Q |
101 |
aattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaagagaaaaggagtgaaagggg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52584722 |
aattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaggagaaaaggagtgaaagggg |
52584821 |
T |
|
| Q |
201 |
gaatcgaatcgagtcgaatcaacactgttttttacgtactgaagaaactattttagcaaaaaagctagtatagtatatatt |
281 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52584822 |
gaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatatt |
52584902 |
T |
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