View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_155 (Length: 293)

Name: NF10140A_low_155
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_155
NF10140A_low_155
[»] chr2 (22 HSPs)
chr2 (13-277)||(40948749-40949014)
chr2 (175-277)||(40945913-40946015)
chr2 (17-158)||(20140822-20140963)
chr2 (19-156)||(1943885-1944022)
chr2 (93-158)||(24895756-24895821)
chr2 (106-157)||(17642434-17642485)
chr2 (43-158)||(28191707-28191821)
chr2 (108-158)||(35652126-35652176)
chr2 (106-158)||(10439836-10439888)
chr2 (93-158)||(578206-578275)
chr2 (108-155)||(12496892-12496939)
chr2 (106-157)||(27987365-27987416)
chr2 (106-157)||(28073897-28073948)
chr2 (92-155)||(28191442-28191505)
chr2 (72-158)||(12926506-12926592)
chr2 (108-158)||(43281892-43281941)
chr2 (106-155)||(8095019-8095068)
chr2 (92-157)||(17642622-17642687)
chr2 (93-158)||(27002997-27003062)
chr2 (97-158)||(35665326-35665387)
chr2 (97-158)||(41245622-41245683)
chr2 (98-146)||(38825334-38825382)
[»] chr3 (17 HSPs)
chr3 (17-158)||(25693296-25693437)
chr3 (10-155)||(52275083-52275225)
chr3 (17-158)||(28259708-28259847)
chr3 (28-158)||(16024763-16024893)
chr3 (17-136)||(51107915-51108033)
chr3 (90-158)||(17321894-17321963)
chr3 (72-155)||(1741971-1742054)
chr3 (43-158)||(54141605-54141719)
chr3 (93-159)||(49278663-49278729)
chr3 (106-157)||(44664531-44664582)
chr3 (107-157)||(28260028-28260078)
chr3 (72-158)||(33309948-33310034)
chr3 (93-159)||(40374639-40374705)
chr3 (97-158)||(31989803-31989864)
chr3 (107-156)||(51107679-51107728)
chr3 (107-156)||(53804596-53804645)
chr3 (98-146)||(38507168-38507216)
[»] chr4 (13 HSPs)
chr4 (72-158)||(17947289-17947375)
chr4 (93-156)||(5521527-5521590)
chr4 (107-155)||(11692153-11692201)
chr4 (93-157)||(38851974-38852038)
chr4 (78-158)||(41823538-41823618)
chr4 (93-157)||(51203221-51203285)
chr4 (106-156)||(11692574-11692623)
chr4 (108-158)||(31792623-31792673)
chr4 (97-158)||(5497092-5497153)
chr4 (97-158)||(52131907-52131968)
chr4 (93-157)||(2478935-2478999)
chr4 (106-154)||(36955682-36955730)
chr4 (107-155)||(40154675-40154723)
[»] chr5 (17 HSPs)
chr5 (93-158)||(40972143-40972208)
chr5 (93-155)||(7630641-7630703)
chr5 (92-160)||(38445989-38446057)
chr5 (17-135)||(42267586-42267707)
chr5 (108-158)||(9125377-9125427)
chr5 (93-158)||(21034622-21034687)
chr5 (97-154)||(32892124-32892181)
chr5 (96-156)||(12542110-12542170)
chr5 (93-149)||(40971848-40971904)
chr5 (52-155)||(38445670-38445773)
chr5 (43-121)||(15304601-15304679)
chr5 (72-158)||(41863733-41863819)
chr5 (93-158)||(3850207-3850272)
chr5 (93-158)||(32892446-32892511)
chr5 (92-156)||(26032249-26032313)
chr5 (118-158)||(37782325-37782365)
chr5 (92-132)||(38142397-38142437)
[»] chr1 (15 HSPs)
chr1 (83-156)||(9117485-9117558)
chr1 (92-158)||(27086271-27086337)
chr1 (106-158)||(91742-91794)
chr1 (108-158)||(14397989-14398039)
chr1 (106-158)||(30567957-30568009)
chr1 (82-156)||(14520840-14520913)
chr1 (97-158)||(538921-538981)
chr1 (108-156)||(3910180-3910229)
chr1 (91-132)||(10840505-10840545)
chr1 (97-158)||(19238170-19238231)
chr1 (93-158)||(33261690-33261754)
chr1 (93-158)||(33281849-33281913)
chr1 (28-158)||(27085953-27086085)
chr1 (126-158)||(35766595-35766627)
chr1 (106-158)||(46947421-46947473)
[»] chr8 (8 HSPs)
chr8 (107-158)||(33757872-33757923)
chr8 (48-157)||(15249561-15249670)
chr8 (93-157)||(22210257-22210321)
chr8 (107-158)||(33758154-33758205)
chr8 (110-151)||(194621-194661)
chr8 (110-151)||(309458-309498)
chr8 (106-155)||(12871117-12871165)
chr8 (97-158)||(36102133-36102194)
[»] chr7 (13 HSPs)
chr7 (106-157)||(1619673-1619724)
chr7 (91-156)||(14584929-14584994)
chr7 (98-156)||(45318526-45318584)
chr7 (97-158)||(2962985-2963046)
chr7 (91-156)||(15998799-15998864)
chr7 (72-157)||(25245012-25245097)
chr7 (92-157)||(30218749-30218814)
chr7 (114-155)||(37389815-37389856)
chr7 (98-146)||(7475804-7475852)
chr7 (96-156)||(13009035-13009095)
chr7 (106-158)||(30219063-30219115)
chr7 (43-158)||(33005106-33005222)
chr7 (51-135)||(33998831-33998915)
[»] scaffold0939 (1 HSPs)
scaffold0939 (48-158)||(685-795)
[»] chr6 (4 HSPs)
chr6 (48-122)||(1427282-1427355)
chr6 (51-155)||(4096749-4096853)
chr6 (108-157)||(4096483-4096532)
chr6 (98-158)||(20510280-20510340)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 40949014 - 40948749
Alignment:
Q  13 aatatcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  40949014 aatatcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacaaaaatatctgtgaagataaaaacacatcgttttattttatatggactaa 40948915  T
Q  113 aatcaaaatttgttatatttatagcgataaaaaacttatttaaccccagttaaaatattaaaacaaaatagtgtaatg-caacaattaatctaaaatcaa 211  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40948914 aataaaaatttgttatatttatagggataaaaaacttatttaaccccagttaaaatattaaaacaaaatagtgtaatgccaacaattaatctaaaatcaa 40948815  T
Q  212 atttgaagaccataaccaaaataaacaaatgcaccatccttcccatcaacgtatgatccacacagg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948814 atttgaagaccataaccaaaataaacaaatgcaccatccttcccatcaacgtatgatccacacagg 40948749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 40946015 - 40945913
Alignment:
Q  175 acaaaatagtgtaatgcaacaattaatctaaaatcaaatttgaagaccataaccaaaataaacaaatgcaccatccttcccatcaacgtatgatccacac 274  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40946015 acaaaatagtgtaatgcaacaattaatctaaaatcaaatttaaagaccataaccaaaataaacaaatgcactatccttcccatcaacgtatgatccacac 40945916  T
Q  275 agg 277  Q
    |||    
T  40945915 agg 40945913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 20140963 - 20140822
Alignment:
Q  17 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 116  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||| || ||| ||||| ||| |||| || ||||||||||||||| ||||||||||     
T  20140963 tcaagaacacatcaaaattattttcgttagggacctaaaacaaaacaaaaaaatttgtgaggatgaaaatacctcgttttattttataaggactaaaatt 20140864  T
Q  117 aaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||||||||||||||||| || ||||| ||||||||||||    
T  20140863 aaaatttgttatatttatagagacaaaaatcttatttaaccc 20140822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 1944022 - 1943885
Alignment:
Q  19 aagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaa 118  Q
    |||||||| ||||  ||||||||||||  |||||||||||||||| || ||| ||||| ||  ||||||| ||||| ||||||||| |||||||||| ||    
T  1944022 aagaacacgtcaacattattttcgttaaagaccaaaaacaaaacaaaaaaatttgtgaggaagaaaacacctcgttctattttataaggactaaaattaa 1943923  T
Q  119 aatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||| | |||||||||||  ||  |||||||||||||||    
T  1943922 aatctattatatttataaggacgaaaaacttatttaac 1943885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 24895756 - 24895821
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| || ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||    
T  24895756 ttttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccc 24895821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 17642485 - 17642434
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    |||||||||||||||| | |||||||||||| ||| ||||||||||||||||    
T  17642485 ggactaaaatcaaaatctattatatttatagggatgaaaaacttatttaacc 17642434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 28191707 - 28191821
Alignment:
Q  43 ttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataa 142  Q
    |||| |||||||||||||||| || | | ||||| ||| ||||||  || ||||||||| ||  || ||||||||||||||| |||||||||||  | ||    
T  28191707 ttagagaccaaaaacaaaacaaaaaattttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttatag-aaaaa 28191805  T
Q  143 aaaacttatttaaccc 158  Q
    |||| |||||||||||    
T  28191806 aaaaattatttaaccc 28191821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 35652126 - 35652176
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||||| |||||||| ||||||||||| ||| |||||||||||||||||    
T  35652126 actaaaattaaaatttgatatatttatagggatgaaaaacttatttaaccc 35652176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 10439836 - 10439888
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||||| ||||||| || | | ||||||||||||||||||    
T  10439836 ggactaaaatcaaaatttgatatatttttaacaacaaaaaacttatttaaccc 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 578275 - 578206
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgtta---tatttatagcgat-aaaaaacttatttaaccc 158  Q
    ||||||||| || ||||||||||||||||||| ||   ||||||||| ||| ||||||||||||||||||    
T  578275 ttttattttttagggactaaaatcaaaatttgctatattatttatagggataaaaaaacttatttaaccc 578206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 12496892 - 12496939
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  12496892 actaaaatcaaaattcgttatatttatagggatgaaaaatttatttaa 12496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 27987365 - 27987416
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  27987365 ggactaaaaacaaaatttgagatatttatagagagaaaaaacttatttaacc 27987416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 28073897 - 28073948
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  28073897 ggactaaaaacaaaatttgagatatttatagagagaaaaaacttatttaacc 28073948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 28191505 - 28191442
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    |||| ||||| || ||||||||||||||||| | ||||||||||| || |||||||||| ||||    
T  28191505 gtttaattttgtacggactaaaatcaaaattcgctatatttatagggacaaaaaacttaattaa 28191442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 12926592 - 12926506
Alignment:
Q  72 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| ||| ||||||  || |||||||||  | |||| ||||||||||||   ||||||||||| ||| |||||||||||||||||    
T  12926592 tgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatatttatagtgatgaaaaacttatttaaccc 12926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 43281892 - 43281941
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  43281892 actaaaatcaaaatttgttatattattag-gatgaaaaacttatttaaccc 43281941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 8095019 - 8095068
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||||||| ||||||||||||||||||||| ||  |||||| |||||||    
T  8095019 ggactaaaaacaaaatttgttatatttatagggactaaaaacatatttaa 8095068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 17642622 - 17642687
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    |||| ||||| || ||||||||||||||||| | ||||||| ||| ||  ||||||||||||||||    
T  17642622 gtttaattttttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 27002997 - 27003062
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| || ||||||||||| |||||||  |||||||||| ||  ||| |||||||||||||    
T  27002997 ttttattttttagggactaaaatccaaatttgacatatttatagggacgaaacacttatttaaccc 27003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 35665387 - 35665326
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| || ||||||||||||||||| | ||||||||||  ||  |||||||||||||||||    
T  35665387 attttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccc 35665326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 41245683 - 41245622
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||| | |||||||||| |||| ||| ||||||||||| || ||||||| ||||||||||    
T  41245683 attttaaagggactaaaatgaaaagttggtatatttatagggacaaaaaacatatttaaccc 41245622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 38825334 - 38825382
Alignment:
Q  98 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 146  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  38825334 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 38825382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 25693437 - 25693296
Alignment:
Q  17 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 116  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||  | ||| ||||| ||| ||||||| ||||||||||||||| |||| ||||||    
T  25693437 tcaagaacacgtcaaaattattttcgttagggaccaaaaacaaaacaacaaaatttgtgaggatgaaaacacctcgttttattttataaggaccaaaatc 25693338  T
Q  117 aaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| ||||||| |||||| ||  |||||||||||||||||    
T  25693337 aaaatatgttataattatagggacgaaaaacttatttaaccc 25693296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 52275083 - 52275225
Alignment:
Q  10 aagaatatcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggac 109  Q
    |||||| |||||||||  ||||| ||||||||||||| |||||||||||||| | ||  || ||  | ||| ||||||| ||||||||||||||| ||||    
T  52275083 aagaatgtcaagaacatgtcaaaattattttcgttagggaccaaaaacaaaataaaa--atttgcaaggatgaaaacacctcgttttattttataaggac 52275180  T
Q  110 taaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    |||| ||||||| |||||||||||||| ||  ||||||||||||||    
T  52275181 taaactcaaaatctgttatatttatag-gacgaaaaacttatttaa 52275225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 28259847 - 28259708
Alignment:
Q  17 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 116  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||| || | | |||| |||  ||||||| | | |||||||||||||||||||||||    
T  28259847 tcaagaacacgtcaaaattattttcgttagggaccaaaaacaaaacaaaaaattttgtg-agaataaaacaccttgctttattttatatggactaaaatc 28259749  T
Q  117 aaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    | ||| |||||| ||||||| ||   ||||||||||||||||    
T  28259748 ataatatgttatttttataggga-cgaaaacttatttaaccc 28259708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 16024763 - 16024893
Alignment:
Q  28 tcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 127  Q
    ||||| |||| ||| |||| ||||||||| |||| | || ||| ||||| ||| ||||||  || ||||||||| || ||||||||||||||||||| ||    
T  16024763 tcaaagttatattcattagagaccaaaaataaaataaaaaaatatgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgata 16024862  T
Q  128 tatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| ||  || ||||||||||||||    
T  16024863 tatttatagggacgaataacttatttaaccc 16024893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 51107915 - 51108033
Alignment:
Q  17 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatc 116  Q
    |||||||| | ||||| |||| || ||||| || ||||||||||| | || ||| ||||| ||| ||||||| | |||||||||| || |||||||||||    
T  51107915 tcaagaactcgtcaaaattatatttgttagggatcaaaaacaaaataaaaaaat-tgtgatgatgaaaacaccttgttttattttttaaggactaaaatc 51108013  T
Q  117 aaaatttgttatatttatag 136  Q
    ||||| ||||||||||||||    
T  51108014 aaaatctgttatatttatag 51108033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 17321894 - 17321963
Alignment:
Q  90 tcgttttattttatatggactaaaatcaaaatttgttatatttatagcga-taaaaaacttatttaaccc 158  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||| ||  ||||||||||||||||||    
T  17321894 tcgttttattttataaggactgaaatcaaaatctgttatatttatagggacgaaaaaacttatttaaccc 17321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 1742054 - 1741971
Alignment:
Q  72 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||| ||| ||||||  || ||||||||| || ||| ||||||||||||||| ||||||||||| ||| |||| |||||||||    
T  1742054 tgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 54141605 - 54141719
Alignment:
Q  43 ttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataa 142  Q
    |||| |||||||||||||||| || | | ||||| ||| ||||||  || ||||||||| ||  ||||||||| ||||||||||||||| || | || ||    
T  54141605 ttagggaccaaaaacaaaacaaaaaattttgtgaggatgaaaacatctcattttatttt-taaagactaaaatgaaaatttgttatattcatggggacaa 54141703  T
Q  143 aaaacttatttaaccc 158  Q
    ||||||| ||||||||    
T  54141704 aaaacttttttaaccc 54141719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 49278663 - 49278729
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccc 159  Q
    |||||||||| | ||||||||||||||||  ||||||| ||||| ||  ||||||||||||||||||    
T  49278663 ttttattttacaaggactaaaatcaaaatcagttatatatatagggacgaaaaacttatttaacccc 49278729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 44664582 - 44664531
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||| ||||| ||||||||||||||  ||| ||||||||||||||||    
T  44664582 ggactaaaaacaaaaattgttatatttataaggattaaaaacttatttaacc 44664531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 28260028 - 28260078
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    |||||||||||||||||| ||||||| ||| ||  ||||||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaacc 28260078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 33309948 - 33310034
Alignment:
Q  72 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| ||| |||||||  ||||||||||| || |||||||||| |||||| | ||||| | ||| ||  |||||||||||||||||    
T  33309948 tgtgaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 33310034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 40374705 - 40374639
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccc 159  Q
    |||| ||||||  ||||||||| | |||||  |||||||||||| || |||||||||||||||||||    
T  40374705 tttttttttatgaggactaaaaacgaaattgattatatttatagggacaaaaaacttatttaacccc 40374639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 31989864 - 31989803
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| || |||||||||| |||||||| ||||||||||  ||  |||||||||||||||||    
T  31989864 attttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccc 31989803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 51107728 - 51107679
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    |||||||||||||||||||||||||| ||  || ||| ||||||||||||    
T  51107728 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 51107679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 53804645 - 53804596
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    |||||||||||||||||| |||||||| || ||  |||||||||||||||    
T  53804645 gactaaaatcaaaatttgatatatttaaagggacgaaaaacttatttaac 53804596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 38507168 - 38507216
Alignment:
Q  98 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 146  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  38507168 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 38507216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 17947289 - 17947375
Alignment:
Q  72 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| ||| ||||||  || ||||||||| || ||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||    
T  17947289 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 5521527 - 5521590
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||||||||| || ||||||||||||||||| | ||||||||||| ||  |||||||||||||||    
T  5521527 ttttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 11692201 - 11692153
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||||||||    
T  11692201 gactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 38852038 - 38851974
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||| || ||| |||||||||||||| |||||||| ||| ||  ||||||||||||||||    
T  38852038 ttttattttttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacc 38851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 41823618 - 41823538
Alignment:
Q  78 gataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||  || |||||| || || ||| ||||||||||||||| |||||||||   ||| |||||||||||||||||    
T  41823618 gataaaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaaccc 41823538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 51203285 - 51203221
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||| || ||||||||||||||||| |  |||||||||| ||  ||||||||||||||||    
T  51203285 ttttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 11692574 - 11692623
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  11692574 ggactaaaaacaaaatttgttata-ttatagagatcaaaaacttatttaac 11692623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 31792673 - 31792623
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||| ||||||||||| ||  ||||| |||||||||||    
T  31792673 actaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 5497092 - 5497153
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||| | |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  5497092 attttaaagggactaaaatgaaaagttgatatatttatagggatcaaaaacatatttaaccc 5497153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 52131968 - 52131907
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| |||||||||||||||||||| ||||||||| ||| ||   | ||||||||||||||    
T  52131968 attttttatggactaaaatcaaaattcgttatatttgtagggacggataacttatttaaccc 52131907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 2478999 - 2478935
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||| ||| || |||||||||||||||||   ||||||||||| ||  ||||||||||||||||    
T  2478999 ttttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 36955682 - 36955730
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttattta 154  Q
    ||||||||| |||||||  |||||||||||||||  |||||||||||||    
T  36955682 ggactaaaaacaaaattcattatatttatagcgaacaaaaacttattta 36955730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 40154675 - 40154723
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||||||||||| |||| ||||||||||| ||  ||||||||||||||    
T  40154675 gactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 40972143 - 40972208
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| || ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||    
T  40972143 ttttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaaccc 40972208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 7630641 - 7630703
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||||||| || ||||||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  7630641 ttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 38445989 - 38446057
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccca 160  Q
    |||| ||||| || ||||||||||||||||| | | ||||||||| ||| |||||||||||||||||||    
T  38445989 gtttaattttttagggactaaaatcaaaattcgctgtatttatagggatgaaaaacttatttaacccca 38446057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 42267707 - 42267586
Alignment:
Q  17 tcaagaacacatcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttatttt---atatggactaaa 113  Q
    |||||||||| ||||| ||||||| ||||| ||| |||||||||||| ||  || || || ||| ||||||| |  |||||||||   ||| ||||||||    
T  42267707 tcaagaacacgtcaaaattatttttgttagggacaaaaaacaaaacaaaaatatttgggaggatgaaaacaccttattttattttataataaggactaaa 42267608  T
Q  114 atcaaaatttgttatatttata 135  Q
    |||||||| | |||||||||||    
T  42267607 atcaaaatatattatatttata 42267586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 9125427 - 9125377
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||| |||||||   |||||||||||||||||||||||||||||||||    
T  9125427 actaaaaacaaaattgactatatttatagcgataaaaaacttatttaaccc 9125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 21034687 - 21034622
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| |  |||||| |||||||||||| ||||||||||| ||  |||||||||||||||||    
T  21034687 ttttattttttggggactataatcaaaatttgatatatttatagggaacaaaaacttatttaaccc 21034622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 32892181 - 32892124
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttattta 154  Q
    ||||| |||||||||||||||||||||   |||||||||| ||| |||||||||||||    
T  32892181 attttttatggactaaaatcaaaatttaccatatttatagggatgaaaaacttattta 32892124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 12542170 - 12542110
Alignment:
Q  96 tattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    |||||| || ||| |||||||||||||  |||||||||||| || ||||||||||||||||    
T  12542170 tattttttagggattaaaatcaaaattcattatatttatagagacaaaaaacttatttaac 12542110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 40971904 - 40971848
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaactt 149  Q
    ||||||||| || |||||||||||||||||| |||||||||||  ||| ||||||||    
T  40971904 ttttattttttagggactaaaatcaaaatttattatatttataaggatgaaaaactt 40971848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 38445773 - 38445670
Alignment:
Q  52 aaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttat 151  Q
    |||||||||||| || | | ||||| ||| ||||||  || |||||| || ||  |||||||||||||||||| || |||||||| ||  ||||||||||    
T  38445773 aaaaacaaaacaaaaaattttgtgacgatgaaaacagctcattttatattttagagactaaaatcaaaatttgatacatttatagggacgaaaaacttat 38445674  T
Q  152 ttaa 155  Q
    ||||    
T  38445673 ttaa 38445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 15304601 - 15304679
Alignment:
Q  43 ttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaat 121  Q
    |||| ||||||||| |||||| || | | ||||||||||||||||  || ||||||||| || ||||||||| ||||||    
T  15304601 ttagagaccaaaaagaaaacaaaaaattttgtgaagataaaaacatctcattttattttttaaggactaaaagcaaaat 15304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 41863733 - 41863819
Alignment:
Q  72 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||| ||| ||||||  || ||||||||||||  || |||||| ||| |||| |||||||| || ||| |||||||||||||||||    
T  41863733 tgtgaggatgaaaacatctcattttattttatagagattaaaataaaattttgatatatttacagggatgaaaaacttatttaaccc 41863819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 3850207 - 3850272
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||||||||| ||||||||| ||||||||   |||||||||| ||  ||||||||| |||||||    
T  3850207 ttttattttatagggactaaaaacaaaattttgaatatttatagggactaaaaacttaattaaccc 3850272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 32892446 - 32892511
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||  |||||||||||||||| | ||||| ||||  ||  |||||||||||||||||    
T  32892446 ttttattttatagagactaaaatcaaaattcgctatatctataaagaagaaaaacttatttaaccc 32892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 26032313 - 26032249
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    |||| ||||| || ||| ||||||||||||| | ||||||||||| ||  |||||||||||||||    
T  26032313 gtttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 37782365 - 37782325
Alignment:
Q  118 aaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  37782365 aaatttgttatatttataggaattaaaaacttatttaaccc 37782325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 38142437 - 38142397
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatattt 132  Q
    |||||||||| || ||||||||||||||||||| |||||||    
T  38142437 gttttattttttaaggactaaaatcaaaatttgctatattt 38142397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 9117485 - 9117558
Alignment:
Q  83 aaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    |||||| || ||| ||||| || | ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  9117485 aaacacctcatttaattttttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaac 9117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 27086271 - 27086337
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||| ||||| || |||||||||||| |||||||||||||||||  ||| |||||||||||||||||    
T  27086271 gtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaaccc 27086337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 91742 - 91794
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  91742 ggactaaaatcaaaatttggtatatttatagagatcaaaaacatatttaaccc 91794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 14398039 - 14397989
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||| ||||||||||||  ||| |||||||||||||||||    
T  14398039 actaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccc 14397989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 30567957 - 30568009
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| ||||||| | ||||||| ||||||| |||||||||||||||||    
T  30567957 ggactaaaaacaaaattcgatatatttttagcgatcaaaaacttatttaaccc 30568009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 14520840 - 14520913
Alignment:
Q  82 aaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    |||||| ||||||||||||| |||||||||||||||||||| | |||| || |||  |  |||||||||||||||    
T  14520840 aaaacatatcgttttatttt-tatggactaaaatcaaaattcgctataattttagaaacgaaaaacttatttaac 14520913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 538921 - 538981
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||||  |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  538921 attttatatggactaaaacgaaaagttggtatatttatag-gatcaaaaacatatttaaccc 538981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 3910229 - 3910180
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcga-taaaaaacttatttaac 156  Q
    ||||||||||||||||| |||||||| || || |||||||||||||||||    
T  3910229 actaaaatcaaaatttgatatatttacagagactaaaaaacttatttaac 3910180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 10840505 - 10840545
Alignment:
Q  91 cgttttattttatatggactaaaatcaaaatttgttatattt 132  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  10840505 cgttttatttt-taaggactaaaatcaaaatttgttatattt 10840545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 19238170 - 19238231
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||| | |||||||||  |||||||||||||||||||| ||  |||||| ||||||||||    
T  19238170 attttagagggactaaaacgaaaatttgttatatttatagggaccaaaaacatatttaaccc 19238231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 33261754 - 33261690
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||  ||  |||||||||||||||||    
T  33261754 ttttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33261690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 33281913 - 33281849
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||  ||  |||||||||||||||||    
T  33281913 ttttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 158
Target Start/End: Complemental strand, 27086085 - 27085953
Alignment:
Q  28 tcaaacttattttcgttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgtttt-attttatatggactaaaatcaaaattt-gt 125  Q
    ||||| |||| ||| |||| ||||||||| |||||| || ||| ||||| ||| ||||||  || |||| ||||| || |||||||||| ||| ||| |     
T  27086085 tcaaaattatattcattagggaccaaaaataaaacaaaaaaatttgtgaggatgaaaacatctcatttttattttttagggactaaaattaaatttttga 27085986  T
Q  126 tatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||  || ||||| ||||||||||||    
T  27085985 tatatttataaggacaaaaatcttatttaaccc 27085953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 35766595 - 35766627
Alignment:
Q  126 tatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||| |||||||||||||||||||||    
T  35766595 tatatttatagggataaaaaacttatttaaccc 35766627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 46947421 - 46947473
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  46947421 ggactaaaatgaaaaattggtatatttatagggatcaaaaacatatttaaccc 46947473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 33757923 - 33757872
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  33757923 gactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaaccc 33757872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 15249561 - 15249670
Alignment:
Q  48 gaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 147  Q
    |||||||||||||| | || | | ||||| ||| ||||||  || ||||||||| ||  ||| |||||||||||||| ||| ||||||| ||| |||| |    
T  15249561 gaccaaaaacaaaataaaaaattttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagc 15249660  T
Q  148 ttatttaacc 157  Q
    ||||||||||    
T  15249661 ttatttaacc 15249670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 22210257 - 22210321
Alignment:
Q  93 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||  || ||| ||||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  22210257 ttttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacc 22210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 33758154 - 33758205
Alignment:
Q  107 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||  |||||||||||| ||| ||||| |||||||||||    
T  33758154 gactaaaatcaaaattcattatatttatagagatgaaaaatttatttaaccc 33758205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 194621 - 194661
Alignment:
Q  110 taaaatcaaaatttgttatatttatagcgataaaaaacttat 151  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  194621 taaaatcaaaatttgttatatttataggga-aaaaaacttat 194661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 309458 - 309498
Alignment:
Q  110 taaaatcaaaatttgttatatttatagcgataaaaaacttat 151  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  309458 taaaatcaaaatttgttatatttataggga-aaaaaacttat 309498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 12871117 - 12871165
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  12871117 ggactaaaa-caaaatttgatatatttatagtgatcaaaaacttatttaa 12871165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 36102194 - 36102133
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||| | |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  36102194 attttagagggactaaaatgaaaagttggtatatttatagggatcaaaaacatatttaaccc 36102133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 1619673 - 1619724
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||||||||||||||||||||||||| |||  || ||||||||||||    
T  1619673 ggactaaaatcaaaatttgttatatttatagggatctaatacttatttaacc 1619724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 14584994 - 14584929
Alignment:
Q  91 cgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||||||||||| || |||||||||||||||||| |||||||| ||| ||  ||||| |||||||||    
T  14584994 cgttttattttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 45318584 - 45318526
Alignment:
Q  98 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||||||| |||  |||| ||||||||| ||||||||||| ||| |||||||||||||||    
T  45318584 ttttataaggataaaaaacaaaatttgatatatttatagagattaaaaacttatttaac 45318526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 2963046 - 2962985
Alignment:
Q  97 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    |||||| | |||||||||  |||| ||| ||||||||||| |||||||||| ||||||||||    
T  2963046 attttagagggactaaaagaaaaagttggtatatttatagggataaaaaacatatttaaccc 2962985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 15998864 - 15998799
Alignment:
Q  91 cgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||||||||||| || ||||||||||||||||||  ||||||| ||| ||  ||||| |||||||||    
T  15998864 cgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 25245097 - 25245012
Alignment:
Q  72 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    ||||||||| ||||||  || |||||| || || |||  |||||||||||| | ||| ||||||| ||| ||||||||||||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaacc 25245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 30218814 - 30218749
Alignment:
Q  92 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    |||| |||||||| | | ||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  30218814 gtttaattttataggaattaaaatcaaaattcgttatatttatatggacgaaaaacttatttaacc 30218749  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 37389815 - 37389856
Alignment:
Q  114 atcaaaatttgttatatttatagcgataaaaaacttatttaa 155  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  37389815 atcaaaattcgttatatttataaggataaaaaacttatttaa 37389856  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 7475852 - 7475804
Alignment:
Q  98 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 146  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  7475852 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 7475804  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 13009095 - 13009035
Alignment:
Q  96 tattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 156  Q
    ||||||||  ||||||||| ||||||||| ||||||||||| ||  |||| ||||||||||    
T  13009095 tattttatgaggactaaaaacaaaatttgctatatttatagggactaaaagcttatttaac 13009035  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 30219063 - 30219115
Alignment:
Q  106 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||||||||||||| | ||||||||||  ||  |||||||||||||||||    
T  30219063 ggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccc 30219115  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 33005106 - 33005222
Alignment:
Q  43 ttagtgaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttat-atggactaaaatcaaaatttgttatatttatagcgata 141  Q
    |||||||| ||||| |||||| || ||| ||||| ||| |||||   || ||||||||| | | |||| |||| ||||||||  ||||||||||| ||      
T  33005106 ttagtgactaaaaataaaacaaaaaaatttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacg 33005205  T
Q  142 aaaaacttatttaaccc 158  Q
    |||||||||||||||||    
T  33005206 aaaaacttatttaaccc 33005222  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 33998831 - 33998915
Alignment:
Q  51 caaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttata 135  Q
    ||||| ||||||| || ||| | ||| |||||||| |  || ||||||||| || ||||||||||||||||||  ||||||||||    
T  33998831 caaaatcaaaacaaaaaaatgtatgaggataaaaatatctcattttattttttagggactaaaatcaaaatttaatatatttata 33998915  T

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Target: scaffold0939 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 685 - 795
Alignment:
Q  48 gaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 147  Q
    ||||||||  |||||| || ||| ||||| ||| ||||||  || || |||||| || ||| |||||| |||||||||||||||||||| ||  |||||     
T  685 gaccaaaactaaaacaaaaaaatttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaat 784  T
Q  148 ttatttaaccc 158  Q
    |||||||||||    
T  785 ttatttaaccc 795  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 1427355 - 1427282
Alignment:
Q  48 gaccaaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatt 122  Q
    |||||||||||||||| || ||| ||||| ||| |||| || ||||||||||||| | |||||||||||||||||    
T  1427355 gaccaaaaacaaaacaaaaaaat-tgtgaggatgaaaatacctcgttttattttacaaggactaaaatcaaaatt 1427282  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 4096749 - 4096853
Alignment:
Q  51 caaaaacaaaacagaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaactta 150  Q
    ||||||||||||| || ||| ||||| ||| ||||||  || ||| ||||| || ||| ||||||||||||||| | ||||||||| ||  ||||| |||    
T  4096749 caaaaacaaaacaaaaaaatttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaattta 4096848  T
Q  151 tttaa 155  Q
    |||||    
T  4096849 tttaa 4096853  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 4096532 - 4096483
Alignment:
Q  108 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 157  Q
    |||||||| |||||| |||||||||||||  | |||||||||||||||||    
T  4096532 actaaaattaaaattcgttatatttataggaacaaaaaacttatttaacc 4096483  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 20510280 - 20510340
Alignment:
Q  98 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 158  Q
    ||||||| ||||||||| |||||||  |||||||||||| ||  ||||||||| |||||||    
T  20510280 ttttatacggactaaaaacaaaattcattatatttatagggactaaaaacttaattaaccc 20510340  T

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