View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_157 (Length: 292)

Name: NF10140A_low_157
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_157
NF10140A_low_157
[»] chr5 (2 HSPs)
chr5 (1-165)||(6729294-6729458)
chr5 (195-280)||(6729197-6729282)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 6729458 - 6729294
Alignment:
1 tcacctttcactggatctgcaacaaccccattctctacctcaacaaattttattcctttctctacactgttatcacttcatcacactaccccccttaccg 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
6729458 tcacccttcactagatctgcaacaaccccattctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacactaccccccttaccg 6729359  T
101 tacctctttcgcaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat 165  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6729358 tacctctttcacaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat 6729294  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 6729282 - 6729197
Alignment:
195 tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccatatt 280  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
6729282 tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccatatt 6729197  T

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