View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_157 (Length: 292)
Name: NF10140A_low_157
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_157 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 6729458 - 6729294
Alignment:
| Q |
1 |
tcacctttcactggatctgcaacaaccccattctctacctcaacaaattttattcctttctctacactgttatcacttcatcacactaccccccttaccg |
100 |
Q |
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| T |
6729458 |
tcacccttcactagatctgcaacaaccccattctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacactaccccccttaccg |
6729359 |
T |
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| Q |
101 |
tacctctttcgcaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
165 |
Q |
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| T |
6729358 |
tacctctttcacaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
6729294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 6729282 - 6729197
Alignment:
| Q |
195 |
tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccatatt |
280 |
Q |
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| T |
6729282 |
tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccatatt |
6729197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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