View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_161 (Length: 290)

Name: NF10140A_low_161
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_161
NF10140A_low_161
[»] chr5 (6 HSPs)
chr5 (1-278)||(29712744-29713021)
chr5 (13-215)||(29687640-29687842)
chr5 (28-235)||(29695721-29695928)
chr5 (121-190)||(42562726-42562795)
chr5 (124-186)||(1812043-1812105)
chr5 (124-185)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (87-185)||(24309796-24309894)
chr1 (124-199)||(24322067-24322142)
chr1 (61-186)||(24340032-24340157)
chr1 (127-185)||(24415456-24415514)
chr1 (124-172)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (63-186)||(15348480-15348603)
chr8 (123-209)||(12199902-12199988)
chr8 (123-209)||(12444330-12444416)
chr8 (123-209)||(12194896-12194982)
chr8 (123-209)||(12439324-12439410)
[»] chr4 (31 HSPs)
chr4 (88-203)||(48156789-48156904)
chr4 (75-186)||(48862859-48862973)
chr4 (63-182)||(7774166-7774285)
chr4 (61-186)||(48735647-48735775)
chr4 (63-180)||(7877344-7877461)
chr4 (91-179)||(7904657-7904745)
chr4 (90-200)||(45366582-45366695)
chr4 (91-202)||(48148047-48148161)
chr4 (88-203)||(45372419-45372534)
chr4 (96-179)||(49044599-49044682)
chr4 (90-182)||(7771026-7771118)
chr4 (120-180)||(49048993-49049053)
chr4 (88-182)||(7907947-7908041)
chr4 (123-185)||(33134223-33134285)
chr4 (88-186)||(48891027-48891125)
chr4 (89-186)||(7765239-7765336)
chr4 (124-184)||(48870162-48870222)
chr4 (124-184)||(48885848-48885908)
chr4 (123-182)||(7813102-7813161)
chr4 (123-182)||(7822591-7822650)
chr4 (88-179)||(49041500-49041591)
chr4 (90-182)||(7789711-7789803)
chr4 (92-179)||(7238086-7238173)
chr4 (123-182)||(7800259-7800318)
chr4 (123-178)||(33133663-33133718)
chr4 (75-186)||(48170935-48171049)
chr4 (91-176)||(48875474-48875559)
chr4 (83-179)||(37827351-37827447)
chr4 (121-184)||(48898342-48898405)
chr4 (127-182)||(48902572-48902627)
chr4 (89-182)||(7786065-7786158)
[»] scaffold0508 (1 HSPs)
scaffold0508 (87-186)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (84-186)||(21015394-21015496)
[»] chr3 (4 HSPs)
chr3 (123-186)||(11024934-11024997)
chr3 (123-182)||(11006359-11006418)
chr3 (123-186)||(11015922-11015985)
chr3 (123-182)||(47452304-47452363)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29712744 - 29713021
Alignment:
Q  1 tcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29712744 tcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcggtaagttgaaaat 29712843  T
Q  101 gtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712844 gtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttg 29712943  T
Q  201 aatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatatt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712944 aatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatatt 29713021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 29687842 - 29687640
Alignment:
Q  13 gatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcga 112  Q
    |||||||| ||||| |||||||||||||| |||| |||| |||| || ||||||||||||| |||||  ||||| |||||||||||||| |||||||| |    
T  29687842 gatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaa 29687743  T
Q  113 aatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaactc 212  Q
    | | || |||||| || |||||||||||  |||||||||| |||||||| || |||||||||||||| |||||| ||| ||||||||||||||| || ||    
T  29687742 agtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggatttgaatgatcaattc 29687643  T
Q  213 aat 215  Q
    |||    
T  29687642 aat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 29695928 - 29695721
Alignment:
Q  28 atagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagaga 127  Q
    |||||||||||||  |||| |||||||||||| | |||||||   | ||||||   ||  ||||||||||||||||||||||| || | || |||||| |    
T  29695928 atagatagagattgaagatatggagttatcaacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagata 29695829  T
Q  128 taagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaactcaatagatagatattg 227  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||||||||||||||||| ||  ||||||      
T  29695828 taagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggatttgaatgattaactcaaaaggaagatatgt 29695729  T
Q  228 ctctgtct 235  Q
    ||||||||    
T  29695728 ctctgtct 29695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  121 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 190  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  124 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  124 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 185  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  87 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 185  Q
    |||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  124 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 199  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 24340157 - 24340032
Alignment:
Q  61 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttga 160  Q
    ||||||||| ||| |||||||   ||||||| |||||| ||||||||||| || | |   | ||||||||| ||||||||| ||||||||||  | ||||    
T  24340157 agaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttga 24340058  T
Q  161 aacgaataagagacttcaccggtaac 186  Q
    |||||||||||||||| |||||||||    
T  24340057 aacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  127 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 185  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  124 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 172  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 15348603 - 15348480
Alignment:
Q  63 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 162  Q
    ||||||| ||| |||||||  ||| |||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  163 cgaataagagacttcaccggtaac 186  Q
    || |||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 209  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 209  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 209  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 209  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 48156789 - 48156904
Alignment:
Q  88 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 187  Q
    |||| ||||||||| |||||||| |||| ||  |  |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||     
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  188 ttaaaaggatttgaat 203  Q
     |||||||||||||||    
T  48156889 ataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 48862973 - 48862859
Alignment:
Q  75 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 171  Q
    |||||||  ||||||||||||||||||||||||||| || | || ||  ||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  48862973 gtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataaga 48862874  T
Q  172 gacttcaccggtaac 186  Q
    |||||||||||||||    
T  48862873 gacttcaccggtaac 48862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 7774166 - 7774285
Alignment:
Q  63 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 162  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || ||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T
Q  163 cgaataagagacttcaccgg 182  Q
     |||||||||||||||||||    
T  7774266 tgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 48735647 - 48735775
Alignment:
Q  61 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattga---gagataagagaaaaccataacttacaaacgcact 157  Q
    ||||||||| ||| ||| ||| |||| |||| || ||||||||||||||| |||||||  | |   |||||||||||||||||  |||||||||| || |    
T  48735647 agaattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatt 48735746  T
Q  158 tgaaacgaataagagacttcaccggtaac 186  Q
    |||||||||||||||||||||||||||||    
T  48735747 tgaaacgaataagagacttcaccggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 180
Target Start/End: Complemental strand, 7877461 - 7877344
Alignment:
Q  63 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 162  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| ||||||    
T  7877461 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 7877362  T
Q  163 cgaataagagacttcacc 180  Q
    || |||||||||||||||    
T  7877361 cgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  91 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 179  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 45366582 - 45366695
Alignment:
Q  90 aagttgaaaatgtgaatttgcgaaatcagatt---gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    ||||||||||||||||||||| || |  || |   |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  187 attaaaaggatttg 200  Q
     |||  ||||||||    
T  45366682 cttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 48148047 - 48148161
Alignment:
Q  91 agttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 187  Q
    |||| |||||||||||||||||| | || ||  ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  188 ttaaaaggatttgaa 202  Q
    || ||||||||||||    
T  48148147 ttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 45372419 - 45372534
Alignment:
Q  88 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 187  Q
    |||| |||||||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  188 ttaaaaggatttgaat 203  Q
    |||  || ||||||||    
T  45372519 ttagtagaatttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 49044599 - 49044682
Alignment:
Q  96 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 179  Q
    ||||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  90 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||||||| | || | ||  | ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  120 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 7908041 - 7907947
Alignment:
Q  88 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||||||||||| ||||  |    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908041 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 185  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 48891125 - 48891027
Alignment:
Q  88 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    |||||||||||||| |||||||| |||| ||  |  |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  89 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  124 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 184  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  124 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 184  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  88 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 179  Q
    ||||||| |||||| |||||||| ||||  |  | ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  90 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||||||| | || | ||  |  ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 7238086 - 7238173
Alignment:
Q  92 gttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 179  Q
    |||| |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 178  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 48170935 - 48171049
Alignment:
Q  75 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 171  Q
    |||||||| ||| |||| ||||||||| |||||||| || | || ||  ||||||||||||| ||||||  |||||||||| || |||||||| | ||||    
T  48170935 gtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaaga 48171034  T
Q  172 gacttcaccggtaac 186  Q
    |||||||||| ||||    
T  48171035 gacttcaccgataac 48171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  91 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 176  Q
    |||||||||||||||||||  ||||  | ||  ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 37827351 - 37827447
Alignment:
Q  83 tggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 179  Q
    |||| ||||||||||||||||||||||| || || |  | ||| |||||||  |||||| |||||||||||||  | ||||  ||||||||||||||    
T  37827351 tggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  121 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 184  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  127 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 7786158 - 7786065
Alignment:
Q  89 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||| |||||||||||||| || | ||  | |||||||| ||||| ||||| |||||||||||| |||||    |||||||| ||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccgg 7786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 11979 - 11880
Alignment:
Q  87 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    |||||||||||||||||||||||| || | |   | ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 21015496 - 21015394
Alignment:
Q  84 ggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 183  Q
    |||||||| || |||||||||| |||| || |  | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | ||||||    
T  21015496 ggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggt 21015397  T
Q  184 aac 186  Q
    |||    
T  21015396 aac 21015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 186  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 47452304 - 47452363
Alignment:
Q  123 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 182  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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