View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_162 (Length: 289)

Name: NF10140A_low_162
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_162
NF10140A_low_162
[»] chr1 (1 HSPs)
chr1 (1-288)||(482308-482594)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 482308 - 482594
Alignment:
Q  1 tcagaagcatactctattattaccttggttcaggcttctttgaagaaggaactgcagcatctatcccaacacaacgtaaatgttttgccaagccttcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  482308 tcagaagcatactctattattaccttggttcaggcttctttgaagaaggaactgcagcatctatcccaacacaacgtaaatgttttgccaagccttcaac 482407  T
Q  101 ctgagtaaattccttaccagattcatgctcatatttaaattttataaatacacaatcattcaaattgttcattaaaataaaatcccctttctttttggat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  482408 ctgagtaaattccttaccagattcatgctcatatttaaattttataaatacacaatcattcaaattgttcattaaaataaaatcccctttctttttggat 482507  T
Q  201 aacatgtttcaattatatattcataaaacagaagtcaaaatattgacactgataacgatgcaaatggctcatatattgttggacatcc 288  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  482508 -atatgtttcaattatatattcataaaacagaagtcaaaatattgacactgataacgatgcaaatggctcatatattgttggaaatcc 482594  T

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