View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_168 (Length: 287)
Name: NF10140A_low_168
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_168 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 27 - 287
Target Start/End: Original strand, 28608940 - 28609200
Alignment:
| Q |
27 |
tgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggt |
126 |
Q |
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| T |
28608940 |
tgttggaggtcctgatgatcgcgaagcattatctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcctgtttggt |
28609039 |
T |
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| Q |
127 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatg |
226 |
Q |
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| T |
28609040 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaattagatgatgagtatg |
28609139 |
T |
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| Q |
227 |
ttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttga |
287 |
Q |
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| T |
28609140 |
ttaatggatttagattgacaacgatgaacaacaatgattctatatcttattcagaagttga |
28609200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 437964 - 437706
Alignment:
| Q |
27 |
tgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttggt |
126 |
Q |
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| T |
437964 |
tgttggtggtcctgatgatcgcgaagccttagctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgctcctgtttgat |
437865 |
T |
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| Q |
127 |
aaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattagatgatgagtatg |
226 |
Q |
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| T |
437864 |
aatgctgaaatagtagacacctcaagtcatgctgaaccacaagggatactatctattgtaatggatagtgagaagcagaaggagttagatgatgagtatg |
437765 |
T |
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| Q |
227 |
ttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagtt |
285 |
Q |
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| T |
437764 |
tgaatggatttagattgacagcgatgaacaacaatgattctatatcttattcagaagtt |
437706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 13660313 - 13660408
Alignment:
| Q |
29 |
ttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgctcttgtttg |
124 |
Q |
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| T |
13660313 |
ttggaggtcctgatgatcatgaagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgctcttgtttg |
13660408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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