View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_17 (Length: 441)
Name: NF10140A_low_17
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 435
Target Start/End: Complemental strand, 37821678 - 37821240
Alignment:
| Q |
7 |
ttggtgttgcatcttaacttctgtgcacttgagactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821678 |
ttggtgttgcatcttaacttctgtgcacttgagactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttc |
37821579 |
T |
|
| Q |
107 |
agttggtgatttagcatgtgctataatactggccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821578 |
agttggtgatttagcatgtgctataatactggccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggtt |
37821479 |
T |
|
| Q |
207 |
gatactgtaatactattcatctcttacatatataatt------------atcatacataactatagcattttattaatgatatatgttaagagcaattcc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
37821478 |
gatactgtaatactattcatctcttacatatataattatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattcc |
37821381 |
T |
|
| Q |
295 |
aaaactcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctac |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37821380 |
aaaactcatggtaatgtgatgtgactgctggcctcacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctac |
37821281 |
T |
|
| Q |
395 |
aaagttttaaatttttggtgtcattggtctcctatcatttc |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821280 |
aaagttttaaatttttggtgtcattggtctcctatcatttc |
37821240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University