View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_178 (Length: 282)

Name: NF10140A_low_178
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_178
NF10140A_low_178
[»] chr5 (2 HSPs)
chr5 (7-67)||(6408328-6408388)
chr5 (27-67)||(22221624-22221664)
[»] chr6 (3 HSPs)
chr6 (27-67)||(4966507-4966547)
chr6 (7-49)||(9818465-9818507)
chr6 (7-63)||(9824171-9824225)
[»] chr4 (1 HSPs)
chr4 (11-64)||(43545726-43545780)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 6408328 - 6408388
Alignment:
Q  7 ttgatgattagtaatgaatttgtgtttaattttgtgcattcttctatgttttagttttcat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  6408328 ttgatgattagtaatgaatttgtgtttaattctgtgcattcttctatgttctagttttcat 6408388  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 22221664 - 22221624
Alignment:
Q  27 tgtgtttaattttgtgcattcttctatgttttagttttcat 67  Q
    |||||||||||||||| ||| |||||||||||||| |||||    
T  22221664 tgtgtttaattttgtgtattgttctatgttttagtcttcat 22221624  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 4966547 - 4966507
Alignment:
Q  27 tgtgtttaattttgtgcattcttctatgttttagttttcat 67  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4966547 tgtgtttaattttgtgcattcttctatgttttagttttcat 4966507  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 9818507 - 9818465
Alignment:
Q  7 ttgatgattagtaatgaatttgtgtttaattttgtgcattctt 49  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  9818507 ttgatgattagtaatgaatatgtgtttaattttgtgcgttctt 9818465  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 9824225 - 9824171
Alignment:
Q  7 ttgatgattagtaatgaatttgtgtttaattttgtgcattcttctatgttttagttt 63  Q
    ||||||||||||||||||| |||  ||||||||||||||||||  ||||||||||||    
T  9824225 ttgatgattagtaatgaatatgt--ttaattttgtgcattctttgatgttttagttt 9824171  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 43545726 - 43545780
Alignment:
Q  11 tgattagtaatgaatttgtgttt-aattttgtgcattcttctatgttttagtttt 64  Q
    |||||||||| |||| ||||||| |||||||||| || |||||||||||||||||    
T  43545726 tgattagtaacgaatatgtgttttaattttgtgcgtttttctatgttttagtttt 43545780  T

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