View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_179 (Length: 282)

Name: NF10140A_low_179
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_179
NF10140A_low_179
[»] chr1 (13 HSPs)
chr1 (11-150)||(1350376-1350515)
chr1 (167-279)||(47586798-47586910)
chr1 (160-243)||(49968797-49968879)
chr1 (160-234)||(41061742-41061814)
chr1 (160-244)||(47107251-47107334)
chr1 (167-234)||(12173683-12173749)
chr1 (167-237)||(10722517-10722585)
chr1 (160-198)||(41181683-41181721)
chr1 (160-237)||(10711698-10711773)
chr1 (160-243)||(9903853-9903934)
chr1 (167-217)||(25592088-25592136)
chr1 (160-234)||(40292681-40292753)
chr1 (160-217)||(1395048-1395103)
[»] chr3 (12 HSPs)
chr3 (160-282)||(24124391-24124513)
chr3 (160-237)||(26845341-26845416)
chr3 (160-217)||(19221599-19221655)
chr3 (160-234)||(32233676-32233749)
chr3 (167-234)||(49500930-49500996)
chr3 (160-243)||(25341922-25342004)
chr3 (167-234)||(43122275-43122341)
chr3 (167-234)||(46664955-46665021)
chr3 (160-195)||(47536740-47536775)
chr3 (160-198)||(32093544-32093582)
chr3 (167-217)||(50543697-50543746)
chr3 (160-237)||(11639437-11639512)
[»] chr7 (10 HSPs)
chr7 (160-282)||(4076744-4076865)
chr7 (160-279)||(18654385-18654503)
chr7 (160-243)||(20037588-20037670)
chr7 (160-243)||(20047719-20047801)
chr7 (160-225)||(23397268-23397331)
chr7 (167-235)||(7459266-7459333)
chr7 (175-244)||(28060062-28060130)
chr7 (160-237)||(46177725-46177800)
chr7 (167-214)||(10282439-10282485)
chr7 (160-217)||(9036298-9036353)
[»] chr4 (8 HSPs)
chr4 (160-282)||(18935136-18935258)
chr4 (160-217)||(1844872-1844928)
chr4 (160-217)||(12881299-12881355)
chr4 (160-235)||(10563904-10563978)
chr4 (160-243)||(19164457-19164538)
chr4 (160-237)||(53779514-53779591)
chr4 (160-234)||(18107153-18107225)
chr4 (167-217)||(31863744-31863792)
[»] chr5 (8 HSPs)
chr5 (160-279)||(40089807-40089926)
chr5 (160-237)||(20209314-20209389)
chr5 (160-243)||(6048707-6048789)
chr5 (160-237)||(4922705-4922780)
chr5 (160-216)||(8891966-8892021)
chr5 (160-198)||(7001394-7001432)
chr5 (160-198)||(34875069-34875107)
chr5 (160-217)||(4416314-4416369)
[»] chr2 (7 HSPs)
chr2 (160-279)||(18704346-18704464)
chr2 (160-243)||(9393007-9393089)
chr2 (160-237)||(24314018-24314093)
chr2 (160-234)||(3000345-3000417)
chr2 (199-237)||(30273507-30273545)
chr2 (160-217)||(7075583-7075638)
chr2 (160-237)||(22295924-22296000)
[»] chr8 (6 HSPs)
chr8 (160-244)||(10267576-10267659)
chr8 (167-237)||(26030969-26031037)
chr8 (160-235)||(45256421-45256495)
chr8 (167-243)||(17658310-17658385)
chr8 (160-198)||(29470828-29470866)
chr8 (160-195)||(31082242-31082277)
[»] chr6 (5 HSPs)
chr6 (160-234)||(26526001-26526073)
chr6 (160-237)||(17079785-17079860)
chr6 (160-237)||(17874395-17874471)
chr6 (160-237)||(6831525-6831600)
chr6 (164-217)||(21251971-21252022)
[»] scaffold0179 (1 HSPs)
scaffold0179 (160-234)||(6997-7070)
[»] scaffold0308 (1 HSPs)
scaffold0308 (160-216)||(11550-11605)
[»] scaffold0007 (1 HSPs)
scaffold0007 (167-217)||(181607-181655)
[»] scaffold0227 (1 HSPs)
scaffold0227 (167-215)||(8404-8450)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 1350376 - 1350515
Alignment:
Q  11 catagaggactgatacaaagctttaatccagtgacattttatcaacattatttcttaagcgcaattcgtgtgataaaatattaaagatgtaaaagctagt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1350376 catagaggactgatacaaagctttaatccagtgacattttatcaacattgtttcttaagcgcaattcgtatgataaaatattaaagatgtaaaagctagt 1350475  T
Q  111 ttcatattagttaaattagttagcctaattggctatataa 150  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1350476 ttcatattagttaaattagttagcctaattggctatataa 1350515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 47586798 - 47586910
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagcatccaaaa 266  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||  ||   | |||||| ||| ||    
T  47586798 aaaaatggaatatatattaaccaccaaaagcaaactcctctaacacaaggtgtgccaaatgaattactttaaaaacaatgagtcggtcaagcacccataa 47586897  T
Q  267 acaaaccattaag 279  Q
    |||||||||||||    
T  47586898 acaaaccattaag 47586910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 49968797 - 49968879
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||| ||  ||||||| |||||    
T  49968797 aacaatcaaaaatggaatttatattaaccaccaaaagc-aacttctctagcacaaggtgtgctaaaagagctactttacaaaca 49968879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 41061814 - 41061742
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||| ||||||||    
T  41061814 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcttctagcacaaggtgtgctaaaagaattact 41061742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 47107334 - 47107251
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaa 244  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||| ||| |||| || ||||||    
T  47107334 aacaatcaaaaatgaaatatatattaactaccaaaagc-aactcctctagtacaaggtgtgccaaaagaactactctacaaacaa 47107251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 12173683 - 12173749
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||| | ||| ||| ||||||||    
T  12173683 aaaaatggaatatatattaaccacaaaaaac-aactcctctagcacaagatgtgccaaaagaattact 12173749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 10722517 - 10722585
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| |||||||    
T  10722517 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactacttta 10722585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 41181683 - 41181721
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  41181683 aacaataaaaaatgggatatatattaaccaccaaaagca 41181721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 10711773 - 10711698
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| |||||||    
T  10711773 aacaatcaaaaatgaaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactacttta 10711698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 9903934 - 9903853
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||| ||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||| ||||||| ||| |||| || |||||    
T  9903934 aacaatcaaaaatggaat-tatgttaaccaccaaaagc-aactcttctagtacaaggtgtgctaaaagaactactctacaaaca 9903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 25592136 - 25592088
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  25592136 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 25592088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 40292753 - 40292681
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||| |||||||| |||||||||| ||||| ||||||||||||| ||| ||| ||| ||||    
T  40292753 aacaatcaaaaatggaat-tatattaatcaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactact 40292681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 1395103 - 1395048
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||| |||||||||||||    
T  1395103 aacaatcaaaaatggaat-tatattaaccaccaaaaac-aactcttctagcacaaggt 1395048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 24124513 - 24124391
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||  | |||||||    
T  24124513 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaagtgtgtcaaaggaattactttaaaaacaaacagtcaaacaagca 24124414  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
    |||||||||||||||||||||||    
T  24124413 tccaaaaacaaaccattaagtga 24124391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 26845341 - 26845416
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  26845341 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattacttta 26845416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 19221599 - 19221655
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  19221599 aacaataaaaaatggaatatatattaacaaccaaaagc-aactcctctagcacaaggt 19221655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 32233749 - 32233676
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||    
T  32233749 aacaataaaaaatgaaatttatattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaactact 32233676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 49500996 - 49500930
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||| | ||| ||| ||||||||    
T  49500996 aaaaatggaatatatattaaccacaaaaagc-aactcctctagcacaagatgtgccaaaagaattact 49500930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 25342004 - 25341922
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||| ||||||| ||||||||||||||||||||||| |||  |||||||| ||||| ||| ||| ||| ||||||| |||||    
T  25342004 aacaatcaaaaatgaaatatatattaaccaccaaaagc-aaccactctagcataaggtgtgccaaaagaactactttacaaaca 25341922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 43122341 - 43122275
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||| | ||| ||| ||||||||    
T  43122341 aaaaatggaatatatattaaccacaaaaagc-aactcctctagcataagatgtgccaaaagaattact 43122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 46664955 - 46665021
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||| | ||| ||| ||||||||    
T  46664955 aaaaatagaatatatattaaccacaaaaag-taactcctctagcacaagatgtgccaaaagaattact 46665021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 47536740 - 47536775
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaa 195  Q
    |||||||||||||||||| |||||||||||||||||    
T  47536740 aacaataaaaaatggaatttatattaaccaccaaaa 47536775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 32093582 - 32093544
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  32093582 aacaatcaaaaatgggatatatattaaccaccaaaagca 32093544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 50543697 - 50543746
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||||| || ||||||| ||||||||||||| |||||    
T  50543697 aaaaatggaatatatattaatcatcaaaagc-aactcctctagcataaggt 50543746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 11639437 - 11639512
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||| ||| ||||||||| ||| ||| ||| |||||||    
T  11639437 aacaatcaaaaatggaat-tatattaaccaccaaaatc-aactcttcttgcacaaggtgtgccaaaagaactacttta 11639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 4076744 - 4076865
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 259  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||  |||||||||    
T  4076744 aacaataaaaaatggaatatataataatcaccaaaagcaaactcctctagcacaaggtgtgccaaaagaattactttaaaaacaaagagtcagacaagca 4076843  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
    ||| |||||||||||||||||||    
T  4076844 tcc-aaaacaaaccattaagtga 4076865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 18654503 - 18654385
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 259  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| ||||| | ||  | |||| ||    
T  18654503 aacaataaaaaatggaatataaattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaactactttacaaacacagagtcatacaaaca 18654405  T
Q  260 tccaaaaacaaaccattaag 279  Q
     |||||| ||||||||||||    
T  18654404 accaaaaccaaaccattaag 18654385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 20037670 - 20037588
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||| ||||||| |||||    
T  20037670 aacaatcaaaaatggaatatatattaaccaccaaaagc-aactcctctagcataaggtgtgccaaaagaactactttacaaaca 20037588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 20047801 - 20047719
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||| ||| || |||| |||||    
T  20047801 aacaataaaaaatggaatatatattaaccaccaaaagc-aactcctctagtacaaggtgtgccaaaagaactattttacaaaca 20047719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 23397331 - 23397268
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaa 225  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  23397331 aacaatcaaaaatggaatatatattaac-accaaaag-aaactcctctagcacaaggtgtgctaaa 23397268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 7459333 - 7459266
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactt 235  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||||||| ||| ||| |||||||||    
T  7459333 aaaaatggaatatatattaaacaccaaaagc-aactcccctagcacaaggtgtgccaaaagaattactt 7459266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 28060062 - 28060130
Alignment:
Q  175 aatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaa 244  Q
    |||||||||||| |||||||||||| ||||||||||| ||||| ||  ||| || |||||||||||||||    
T  28060062 aatatatattaaacaccaaaagcaa-ctcctctagcataaggtgtgtcaaatgagttactttaaaaacaa 28060130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 46177725 - 46177800
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||||||||||| | ||||||| ||| ||||||||| | ||||| ||||||| |||||||||||    
T  46177725 aacaatcaaaaatggaatatatattagc-accaaaaacaa-ctcctctagtataaggtgtgctaaaagaattacttta 46177800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 10282485 - 10282439
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaa 214  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  10282485 aaaaatggaatatatattaaccacaaaaaac-aactcctctagcacaa 10282439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 9036298 - 9036353
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||| ||||||  |||||||||||||||||||||  |||||||||||||| |||||    
T  9036298 aacaatcaaaaataaaatatatattaaccaccaaaa--aaactcctctagcataaggt 9036353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 18935136 - 18935258
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 259  Q
    |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||  ||||||| |    
T  18935136 aacaattaaaaatgaaatatatattaaccgccaaaagcaaactccactagcacaaggtgtgccaaatgaattactttaaaaacaaacagtcagacaagta 18935235  T
Q  260 tccaaaaacaaaccattaagtga 282  Q
    |||||||||||||||||||||||    
T  18935236 tccaaaaacaaaccattaagtga 18935258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 1844928 - 1844872
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||    
T  1844928 aacaataaaaaatggaatttatattaaccatcaaaaac-aactcctctagcacaaggt 1844872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 12881355 - 12881299
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  12881355 aacaatcaacaatggaatttatattaaccaccaaaagc-aactcctctagcacaaggt 12881299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 10563978 - 10563904
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactt 235  Q
    |||||| |||||||||||||||||||| |||||||||| |||||| |||||| ||||| ||| | | |||||||||    
T  10563978 aacaatcaaaaatggaatatatattaaacaccaaaagc-aactcccctagcataaggtgtgccagaagaattactt 10563904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 19164457 - 19164538
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||| ||| |||| || |||||    
T  19164457 aacaatcaaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggtgtgccaaaagaactactctacaaaca 19164538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 53779514 - 53779591
Alignment:
Q  160 aacaataaaaaatggaatatatatt-aaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||||||||||| |||||||||| || |||||||||| |||||  |||||||||||| ||| ||| |||||||||||    
T  53779514 aacaataaaaaatgaaatatatattaaaacaccaaaagc-aactctcctagcacaaggtgtgccaaaagaattacttta 53779591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 18107225 - 18107153
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||| |||||||| |||||||||| ||||| ||| ||||||||| ||| ||| ||| ||||    
T  18107225 aacaataaaaaatggaat-tatattaatcaccaaaagc-aactcttctggcacaaggtgtgccaaaagaactact 18107153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 31863744 - 31863792
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  31863744 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 31863792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 40089807 - 40089926
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 259  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||||| | ||  |||||||||    
T  40089807 aacaatcaaaaatgtaatatatattaaccaccaaaagcgaacccctctagcacaaggtgtgccaaaggaattgctttaaaaacataaagttagacaagca 40089906  T
Q  260 tccaaaaacaaaccattaag 279  Q
     ||| |||||| ||||||||    
T  40089907 cccataaacaatccattaag 40089926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 20209389 - 20209314
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  20209389 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattacttta 20209314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 6048707 - 6048789
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||| ||| |||| || |||||    
T  6048707 aacaataaaaaatggaatatatattaaccaccaaaagc-aactcctctagcataaggtgtgccaaaagaactactctacaaaca 6048789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 4922705 - 4922780
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||||||    
T  4922705 aacaatcaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcataaggtgtgctaaaagaattacttta 4922780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 8891966 - 8892021
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaagg 216  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  8891966 aacaataaaaaatgggatatatattaaccaccaaaagc-agctcctatagcacaagg 8892021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 7001432 - 7001394
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7001432 aacaataaaaaatgggatatatattaaccaccaaaagca 7001394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 34875107 - 34875069
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  34875107 aacaatcaaaaatggaatttatattaaccaccaaaagca 34875069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 4416369 - 4416314
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||| ||||| || |||||||||| ||||| |||||||||||||    
T  4416369 aacaataaaaaatggaat-tatataaatcaccaaaagc-aactcttctagcacaaggt 4416314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 18704464 - 18704346
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaaacagaaagacaagca 259  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| | ||| ||| ||||||||  ||| ||||| ||  |||||||||    
T  18704464 aacaataaaaaatggaatatatattaaccatcaaaagc-aactcgtctagcacaagatgtgccaaaagaattactgcaaatacaaagagtcagacaagca 18704366  T
Q  260 tccaaaaacaaaccattaag 279  Q
     |||||||||||||||||||    
T  18704365 accaaaaacaaaccattaag 18704346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 9393007 - 9393089
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| |||||    
T  9393007 aacaataaaaaatgaaatatatattaaccaccaaaagc-aactcctctagcacaaggtgtgccaaaagaaatactttacaaaca 9393089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 24314093 - 24314018
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  24314093 aacattaaaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaacgaattacttta 24314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 3000417 - 3000345
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    |||||||||||||||||| |||||||| |||||||||| ||||| ||| ||||||||| ||| ||| ||| ||||    
T  3000417 aacaataaaaaatggaat-tatattaatcaccaaaagc-aactcttctggcacaaggtgtgccaaaagaactact 3000345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 30273507 - 30273545
Alignment:
Q  199 aactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  30273507 aactcctctagcacaaggtgtgctaaaagaattacttta 30273545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 7075583 - 7075638
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    |||||||||||||||||| |||||||| || ||||||| ||||| |||||||||||||    
T  7075583 aacaataaaaaatggaat-tatattaatcatcaaaagc-aactcttctagcacaaggt 7075638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 22296000 - 22295924
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||| |||||||||||||||  |||||| || ||||||| |||||||| ||| ||| ||| |||||||    
T  22296000 aacaatcaaaaatgaaatatatattaaccattaaaagc-aattcctctaacacaaggtgtgccaaaagaactacttta 22295924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 10267576 - 10267659
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaacaa 244  Q
    ||||||||||||||||||||||| ||| ||||||||  || ||||||||||||||||| ||| ||||||||||||||||||||||    
T  10267576 aacaataaaaaatggaatatataataatcaccaaaaataa-ctcctctagcacaaggtgtgccaaaggaattactttaaaaacaa 10267659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 26030969 - 26031037
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||| |||||    
T  26030969 aaaaatggaatatatattaac-accaaaagcaa-ctcctctagcacaaggtgtgctaaaagaattgcttta 26031037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 45256495 - 45256421
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactt 235  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||| |||||    
T  45256495 aacaatagaaaatgaaatatatattaaccaccaaaaac-aactcctctagcacaaggtgtgccaaaagaactactt 45256421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 17658310 - 17658385
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattactttaaaaaca 243  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||| ||  ||||||| |||||    
T  17658310 aaaaatggaatatatattaaccaccaaaagc-agctcctgtagcacaaggtgtgccaaaagagctactttacaaaca 17658385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 29470866 - 29470828
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagca 198  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29470866 aacaataaaaaatgaaatatatattaaccaccaaaagca 29470828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Complemental strand, 31082277 - 31082242
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaa 195  Q
    |||||||||||||||||| |||||||||||||||||    
T  31082277 aacaataaaaaatggaatttatattaaccaccaaaa 31082242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 26526001 - 26526073
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattact 234  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  26526001 aacaataaaaaatggaatatatattaa-caccaaaagc-aacttctctagcacaaggtgtgctaaaagaattact 26526073  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 17079860 - 17079785
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||| ||| ||| |||||||    
T  17079860 aacaatcaaaaatggaat-tatattaaccaccaaaag-aaactcttctagcacaaggtgtgccaaaagaactacttta 17079785  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 17874471 - 17874395
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||| | ||| | | |||||||||||    
T  17874471 aacaataaaaaatggaatatatattaaacaccaaaagc-aactcccctaacacaagttgtgccagaagaattacttta 17874395  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 6831600 - 6831525
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggtatgctaaaggaattacttta 237  Q
    |||||| ||||||||||| |||||||| |||||||||||| ||| ||||||||||||| ||| ||| ||| |||||||    
T  6831600 aacaatcaaaaatggaat-tatattaatcaccaaaagcaa-ctcttctagcacaaggtgtgccaaaagaactacttta 6831525  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 21252022 - 21251971
Alignment:
Q  164 ataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  21252022 ataaaaaatggaatatatattaa-caccaagagc-aactcctctagcacaaggt 21251971  T

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Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 6997 - 7070
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctct-agcacaaggtatgctaaaggaattact 234  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| || ||||||| ||||||||    
T  6997 aacaataaaaaatggaatatatattaa-caccagaagc-aactcctctaagcacaaagtgtgctaaaagaattact 7070  T

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Target: scaffold0308 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 11550 - 11605
Alignment:
Q  160 aacaataaaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaagg 216  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||    
T  11550 aacaatcaaaaatgggatatatattaaccaccaaaagc-agctcctatagcacaagg 11605  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 181607 - 181655
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaaggt 217  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  181607 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaaggt 181655  T

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Target: scaffold0227 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 8450 - 8404
Alignment:
Q  167 aaaaatggaatatatattaaccaccaaaagcaaactcctctagcacaag 215  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  8450 aaaaatggaat-tatattaaccaccaaaagc-aactcttctagcacaag 8404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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