View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_18 (Length: 441)
Name: NF10140A_low_18
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 3591985 - 3592424
Alignment:
| Q |
1 |
tcaacattggttcacttttttcttttagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaacatggtt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591985 |
tcaacattggttcacttttttcttgtagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaacatggtt |
3592084 |
T |
|
| Q |
101 |
ttaaattgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgcatttacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592085 |
ttaaattgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgcatttacg |
3592184 |
T |
|
| Q |
201 |
atttaaaacttaagtccacaatataaactgggttaaaagaaaaactaatagggaatgctaagaattccctgtgcaatgtacaatgaagtcagcaataact |
300 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
3592185 |
atttaaaacttaagtccacaatatgaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagcgataact |
3592284 |
T |
|
| Q |
301 |
gcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagat----caaacaatctaagcaacagtt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3592285 |
gcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagatcgaccaaacaatctaagcaacagtt |
3592384 |
T |
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| Q |
397 |
atccaaaagtttatggatactaatgtcatgatgtccatct |
436 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
3592385 |
atccaaaagtttatggatactaatgtcatgatggccatct |
3592424 |
T |
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