View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_181 (Length: 280)
Name: NF10140A_low_181
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_181 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 4750515 - 4750780
Alignment:
| Q |
13 |
atgttaatgacagagaacaattgatcaaagggaagaaaactaccaataagtcattgtgttggatgaaggagaacaaagggaaagatgctttacataaaca |
112 |
Q |
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| T |
4750515 |
atgttaatgacagagaacaattgatcaaagggaagaaaactaccaataagtcattgtgttggatgaaggagaacaaagggaaagatgctttacataaaca |
4750614 |
T |
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| Q |
113 |
cgcaacttgtttggcaattttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggcctc |
212 |
Q |
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| T |
4750615 |
tgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttacccatttttataaacatctcaaagcggcctc |
4750714 |
T |
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| Q |
213 |
ccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
278 |
Q |
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| T |
4750715 |
ccttccgcccccaactttggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
4750780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 86 - 278
Target Start/End: Original strand, 4750794 - 4750986
Alignment:
| Q |
86 |
caaagggaaagatgctttacataaacacgcaacttgtttggcaattttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
185 |
Q |
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| T |
4750794 |
caaagcgaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750893 |
T |
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| Q |
186 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
278 |
Q |
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| T |
4750894 |
tttttataaacatctcaaagcggcctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
4750986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 51322911 - 51322743
Alignment:
| Q |
110 |
acacgcaacttgtttggcaattttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
209 |
Q |
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||||||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51322911 |
acacgcaacttgtttggcagttttatcaaatgtggcattaagatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
51322812 |
T |
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| Q |
210 |
ctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
278 |
Q |
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| T |
51322811 |
ctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcat |
51322743 |
T |
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