View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_186 (Length: 277)
Name: NF10140A_low_186
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_186 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 849030 - 848779
Alignment:
| Q |
26 |
atcgatggaagagggtaataataagagaggaagaattctaataacaaacgacgacggaatcgacgctcctggcttaagatgtttggtatcatcattagtg |
125 |
Q |
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| T |
849030 |
atcgatggaagagggtaataataagagaggaagaattctaataacaaacgacgacggaatcgacgctcctggcttaagaggtttggtatcatcattagtg |
848931 |
T |
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| Q |
126 |
aatacgaatcttttcaatatctttgtatgtgctcctgatagtgagaaatcagcagttagtcacagcatcacatggcttcatcctatatctgccaaaaaag |
225 |
Q |
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| T |
848930 |
aatacgaatcttttcaatatatttgtatgtgctcctgatagtgagaaatcagcagttagtcacagcatcacatggcttcatcctatatctgccaaacaag |
848831 |
T |
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| Q |
226 |
ttcacattcatggaaccattgcttccttctctgtttctggaactcctgctga |
277 |
Q |
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| T |
848830 |
ttcatattcatggaaccattgcttccttctctgtttctggaactcccgctga |
848779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 853185 - 853086
Alignment:
| Q |
166 |
gtgagaaatcagcagttagtcacagcatcacatggcttcatcctatatctgccaaaaaagttcacattcatggaaccattgcttccttctctgtttctgg |
265 |
Q |
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| T |
853185 |
gtgagaaatcagccgttagccattgtatgacatggcttcacccagttgctgtcaaacaagttgacattcatggaaccgttgcttccttcgcggtttctgg |
853086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 47053644 - 47053720
Alignment:
| Q |
165 |
agtgagaaatcagcagttagtcacagcatcacatggcttcatcctatatctgccaaaaaagttcacattcatggaac |
241 |
Q |
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| T |
47053644 |
agtgagaaatcagctgtgagtcacagtattacatggcttcaccctatagctgccaagaaagttcacattgatggaac |
47053720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 47063525 - 47063603
Alignment:
| Q |
166 |
gtgagaaatcagcagttagtcacagcatcacat-ggcttcatcctatatctgccaaaaaagttcacattcatggaacca |
243 |
Q |
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| T |
47063525 |
gtgagaaatcagatgttagtcacggtattacattggcttcaccctatatctgccaagaaagctcaccttgatggaacca |
47063603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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