View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_188 (Length: 277)
Name: NF10140A_low_188
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_188 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 56109363 - 56109091
Alignment:
| Q |
1 |
tcacactctacaataaactcgtcatttttatgaaagtcgaaaattgtaaaagtggcagtaagattatcattatgctctttcacaatacgacatccagata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
56109363 |
tcacactctacaataaactcgtcatttttatgaaagtcgaaaattgtaaaagtggcagtaagattatcattatgctctttcacaatacggcatccagata |
56109264 |
T |
|
| Q |
101 |
atcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatgtcatcaacatttgcttctcaaaaggtgatggagtcataagaacaggttgctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
56109263 |
atcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatatcatcgacatttgcttctcaaaaggtgatggagtcctaagaacaggttgctt |
56109164 |
T |
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| Q |
201 |
gtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgaca |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56109163 |
gtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgaca |
56109091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 26015129 - 26014858
Alignment:
| Q |
1 |
tcacactctacaataaactcgtcatttttatgaaagtcgaaaattgtaaaagtggcagtaagattatcattatgctctttcacaatacgacatccagata |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26015129 |
tcacactctagaataaactcgtcatttttatgaaagtcgaaaattgtaaaagtggcagtaagattatcattatgctctttcacaatacgacatccagata |
26015030 |
T |
|
| Q |
101 |
atcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatgtcatcaacatttgcttctcaaaaggtgatggagtcataagaacaggttgctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||| ||||| |||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
26015029 |
atcccaaaacttcaacttgaaatttcttgacgattt-atgtgtatatatcctcgacatttgcttctcaaaaggtgatggagtcctaagaacacgttgctt |
26014931 |
T |
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| Q |
201 |
gtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgaca |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26014930 |
gtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttcgaca |
26014858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 29049 - 29229
Alignment:
| Q |
89 |
gacatccagataatcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatgtcatcaacatttgcttctcaaaaggtgatggagtcataag |
188 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || || ||||| | |||||| ||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
29049 |
gacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaag |
29148 |
T |
|
| Q |
189 |
aacaggttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttc |
269 |
Q |
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||| ||||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |
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| T |
29149 |
aactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttc |
29229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 276159 - 276339
Alignment:
| Q |
89 |
gacatccagataatcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatgtcatcaacatttgcttctcaaaaggtgatggagtcataag |
188 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || || ||||| | |||||| ||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
276159 |
gacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaag |
276258 |
T |
|
| Q |
189 |
aacaggttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttc |
269 |
Q |
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|
||| ||||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |
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| T |
276259 |
aactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttc |
276339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 26396764 - 26396944
Alignment:
| Q |
89 |
gacatccagataatcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatgtcatcaacatttgcttctcaaaaggtgatggagtcataag |
188 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || || ||||| | |||||| ||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
26396764 |
gacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatcattgacatttgcttctcaaaaggtgatggagttttaag |
26396863 |
T |
|
| Q |
189 |
aacaggttgcttgtgccatgtcttaaaatcagcttgcttttccgcctcttctctatcatgtaaagcaactttatatttttc |
269 |
Q |
| |
|
||| ||||| || |||||||| ||||||||||| ||| |||| || ||||| ||||| || |||||||||| ||||||||| |
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| T |
26396864 |
aactggttgtttatgccatgtattaaaatcagcatgcatttctgcttcttccctatcttgcaaagcaacttcatatttttc |
26396944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 19219289 - 19219334
Alignment:
| Q |
99 |
taatcccaaaacttcaacttgaaatttcttgaagatttcatgtgta |
144 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19219289 |
taatcccaaaacttcaacttgaaatttcatgaagatttcatgtgta |
19219334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 6967555 - 6967524
Alignment:
| Q |
242 |
tatcatgtaaagcaactttatatttttcgaca |
273 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6967555 |
tatcatgtaaagcaactttatatttttcgaca |
6967524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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