View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_190 (Length: 276)
Name: NF10140A_low_190
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_190 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 22893977 - 22893714
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22893977 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
22893878 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctccaattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22893877 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctccaattct |
22893778 |
T |
|
| Q |
201 |
taacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattatatt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22893777 |
taacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattatatt |
22893714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 22898296 - 22898033
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||| |||||||| | | |||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22898296 |
tcagctaaatcaactcctgcaggatattatgatgttaatggtcaactcaagaatttgacccttttcagtggcaatcctatgcaggtatggattgaatatg |
22898197 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctccaattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
22898196 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttgtcattgaccagagatctttctccaatttt |
22898097 |
T |
|
| Q |
201 |
taacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattatatt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
22898096 |
aaacaatagtatgtatgttggattttcatcagctactggttcagttttcacttctcattatatt |
22898033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 22809677 - 22809405
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22809677 |
tcagctaattcaactcctgcaggatattatgatagtaatggtcaattcaagaatatgagccttttcagtggctatcctatgcatgtatggattgaatatg |
22809578 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaat------------gttgttaaaccaaaacaacctttgttatcattgaccaaagatct |
188 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
22809577 |
atggtgaaaagaaaaagattgatgctactttagctccaattaatgttggttttaatgttgttaaaccaacacgacctttgttatcattcaccaaagatct |
22809478 |
T |
|
| Q |
189 |
ttctccaattcttaacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattat |
261 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||| | || ||||| ||||| ||||||||||| |
|
|
| T |
22809477 |
ttctccaattcttaacactagtatgtatgttggattctcatcttcaacaggttctattctatcttctcattat |
22809405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 22826214 - 22826019
Alignment:
| Q |
69 |
tggctatcctatgcaggtatggattgaatatgatggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttg |
168 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22826214 |
tggctatcctatgcaggtatggatagaatatgatggtgaaaataaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttg |
22826115 |
T |
|
| Q |
169 |
ttatcattgaccaaagatctttctccaattcttaacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattatatt |
264 |
Q |
| |
|
|| |||||||||| ||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
22826114 |
ttttcattgaccagagatcttcctccaattttgaacaatagtatgtatgttggattctcatcagctactggttcagttttcacttctcattatatt |
22826019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 94 - 264
Target Start/End: Complemental strand, 22913605 - 22913435
Alignment:
| Q |
94 |
gaatatgatggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaccaaagatctttctc |
193 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22913605 |
gaatatgatggagtgaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatcattgaacaaagatctttctt |
22913506 |
T |
|
| Q |
194 |
caattcttaacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctcattatatt |
264 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| | || |||||| |||||||||||||||||||| |
|
|
| T |
22913505 |
caattcttaacactagtatgtatgttggattctcatcttcaacaggttcaattctaacttctcattatatt |
22913435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22889325 - 22889087
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||| || || |||| |||||| || ||||||||||||||||||||||||| |
|
|
| T |
22889325 |
tcagctgattcaactcctgcaggatattatgatggttatggtcaattcaaggatttatccctttccagtggataccctatgcaggtatggattgaatatg |
22889226 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttg---------ttaaaccaaaacaacctttgttatcattgaccaaagatctttc |
191 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22889225 |
atggagtgaagaaaaagattgatgttactttagcaccaatgagtgttggtgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttc |
22889126 |
T |
|
| Q |
192 |
tccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
| ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
22889125 |
ttcaattctcaacaatagaatgtatgttggattctcatc |
22889087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22831064 - 22830826
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| ||||| |||| || ||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
22831064 |
tcagctaattcaactcctgcaggatattatgatgatactggtcgattcaggaatttatcccttaccagtggacatcctatgcaggtatggattgaatatg |
22830965 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttg---------ttaaaccaaaacaacctttgttatcattgaccaaagatctttc |
191 |
Q |
| |
|
|||| | |||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
22830964 |
atggagtgaagaaaaagattgatgttaccttagctccagttagtgttggttttagtcataaaccaacacaaccgacgttatcattgaccaaagatctttc |
22830865 |
T |
|
| Q |
192 |
tccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
22830864 |
cccaattctcaacaatagaatgtatgttggattctcatc |
22830826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 22805269 - 22805113
Alignment:
| Q |
74 |
atcctatgcaggtatggattgaatatgatggtgaaaagaaaaagattgatgttactttagctccaattaatgttgttaaaccaaaacaacctttgttatc |
173 |
Q |
| |
|
||||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| |||||| |
|
|
| T |
22805269 |
atcctatacaggtatggattgattatgatggagtgaagaaaaagattgatgttactttagctccagtttatgttgttaaaccaacaggaccttcgttatc |
22805170 |
T |
|
| Q |
174 |
attgaccaaagatctttctccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22805169 |
aatgaccaaagatctttctccaattcttaacaatagtatgtatgttggattctcatc |
22805113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22815060 - 22814822
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | |||||||||||| | | || |||| || ||| | |||||| |||||||||||||| |||| |
|
|
| T |
22815060 |
tcagctaattcaactcctgcaggatattataatgatcatggtcaattcagggagttatccctttccaatggatttcctatacaggtatggattgactatg |
22814961 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgtt---------aaaccaaaacaacctttgttatcattgaccaaagatctttc |
191 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| | ||||| | ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22814960 |
atggagtgaagaaaaagattgatgttactttagctccaatgagtgttggtgctagtaataaaccaacacaacctttgttatcattgaccaaagatctttc |
22814861 |
T |
|
| Q |
192 |
tccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
| ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
22814860 |
ttcaattctcaacaatagaatgtatgttggattctcatc |
22814822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 264
Target Start/End: Complemental strand, 22875890 - 22875683
Alignment:
| Q |
60 |
ccttatcagtggctatcctatgcaggtatggattgaatatgatggtgaaaagaaaaagattgatgttactttagctccaattaatgtt-gt--taaacca |
156 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||| |||||||| | || ||||||||||||||||||||||||||||| ||| | || ||||||| |
|
|
| T |
22875890 |
ccttttcagtggatatcccatgcaggtatggattgactatgatggagtgaaaaaaaagattgatgttactttagctccaatagatgctagtaataaacca |
22875791 |
T |
|
| Q |
157 |
aaacaacctttgttatcattgaccaaagatctttctccaattcttaacaatagtatgtatgttggattttcatcagctactggttcatttctaacttctc |
256 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| | || |||| | || || |||||| |
|
|
| T |
22875790 |
acacaacctttgttatcattgaccaaagatctttctccaattctcaacaatagaatgtatgttggattctcatcttcaacaggtttaattttagcttctc |
22875691 |
T |
|
| Q |
257 |
attatatt |
264 |
Q |
| |
|
|||||||| |
|
|
| T |
22875690 |
attatatt |
22875683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22858495 - 22858254
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| || ||||| |||||| | || |||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
22858495 |
tcagctaattcaactcctgcaggatactataatgctattggtcgattcaacgacttatccctttctagtggatatcctatgcaggtatggatagaatatg |
22858396 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaat------------gttgttaaaccaaaacaacctttgttatcattgaccaaagatct |
188 |
Q |
| |
|
|||| | |||||||| ||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||| || |||||||| |
|
|
| T |
22858395 |
atggagtgaagaaaaatattgatgttacattagctccaattaattttggttgtaatgttgttaaaccagcacgacctttgttatcattcacgaaagatct |
22858296 |
T |
|
| Q |
189 |
ttctccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
22858295 |
ttctccaattctcaacaatagaatgtatgttggattctcatc |
22858254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 22880618 - 22880386
Alignment:
| Q |
7 |
aattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatgatggtg |
106 |
Q |
| |
|
||||||| | |||||||||||||||||| | ||| || ||||||| || || |||| |||||| ||||| ||||||||||||||||| |||||||| | |
|
|
| T |
22880618 |
aattcaatttctgcaggatattatgatgattatgatcgattcaaggatttatccctttccagtggatatcccatgcaggtatggattgactatgatggag |
22880519 |
T |
|
| Q |
107 |
aaaagaaaaagattgatgttactttagctccaattaatgttgtt---------aaaccaaaacaacctttgttatcattgaccaaagatctttctccaat |
197 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||| ||||| | ||||||| || || |||||| |||||||||||||||||||||||||| |
|
|
| T |
22880518 |
tgaagaaaaagattgaggttacattagctccgattagtgttggttttaataataaaccaacacgacatttgttgtcattgaccaaagatctttctccaat |
22880419 |
T |
|
| Q |
198 |
tcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22880418 |
tctcaacaatagtatgtatgttggattatcatc |
22880386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22840085 - 22839847
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || || ||||| | || || ||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
22840085 |
tcagctaattcaactcctgcaggatattacgatgaatataatcgattcagggatttatccctctccagtggatatcctatgcaagtatggattgaatatg |
22839986 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgtt---------aaaccaaaacaacctttgttatcattgaccaaagatctttc |
191 |
Q |
| |
|
|| | | |||||||||||||||||||| ||||||||| ||| ||||| | ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
22839985 |
atagagtgaagaaaaagattgatgttaccttagctccatttagtgttggttttagtcataaaccaacacaaccgacgttatcattgaccaaagatctttc |
22839886 |
T |
|
| Q |
192 |
tccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
22839885 |
cccaattctcaacaatagaatgtatgttggattctcatc |
22839847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 22885500 - 22885420
Alignment:
| Q |
150 |
taaaccaaaacaacctttgttatcattgaccaaagatctttctccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
22885500 |
taaaccaacacaacctttgttatcattgaccaaagatctttctccaatactcaacaatagaatgtatgttggattctcatc |
22885420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22885627 - 22885594
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatg |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
22885627 |
tcagctaattcaactcctgcaggatattatgatg |
22885594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 21150681 - 21150919
Alignment:
| Q |
1 |
tcagctaattcaactcctgcaggatattatgatggtaatggtcaattcaagaatataagccttatcagtggctatcctatgcaggtatggattgaatatg |
100 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||| ||||| | |||||| || || |||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
21150681 |
tcagctaactcaacttctgcaggctattatgatgataatgatggattcaatgatttatcccttttcagtggatatcctatgcatgtatggattgaatatg |
21150780 |
T |
|
| Q |
101 |
atggtgaaaagaaaaagattgatgttactttagctccaattaatgttgtt---------aaaccaaaacaacctttgttatcattgaccaaagatctttc |
191 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| ||||| | |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
21150781 |
atggtgaaaagaagaagattaatgttactttagctccaattagtgttggttttaataaaaaaccagcaagacctttgttatcattgaccaaagatctttc |
21150880 |
T |
|
| Q |
192 |
tccaattcttaacaatagtatgtatgttggattttcatc |
230 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
21150881 |
tccagttctcaacaatagtatgtatgttggattctcatc |
21150919 |
T |
|
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