View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_191 (Length: 276)
Name: NF10140A_low_191
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_191 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 37119374 - 37119524
Alignment:
| Q |
117 |
acttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgat |
216 |
Q |
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| T |
37119374 |
acttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgat |
37119473 |
T |
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| Q |
217 |
ctttgctatctccttttatagctgcactttccactcctgaataatattttt |
267 |
Q |
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| T |
37119474 |
ccttgctatctccttttacagctgcactttccactcctgaataatattttt |
37119524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 37119260 - 37119344
Alignment:
| Q |
3 |
atggaacaagaagggtcgtcccttatctcacacacagggacagggtaatgaggataaccagctacacaaggccatgctacaattg |
87 |
Q |
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| T |
37119260 |
atggaacaagaagggtcgtcccttatctcacacacagggacagggtaatgaggataaccagctacacaaggccatgctacaattg |
37119344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 37131101 - 37131238
Alignment:
| Q |
122 |
accaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttg |
221 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || ||| |||||||| || ||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
37131101 |
accaacactcaccaattctgcatgacagaatttctttcttagcagagatgtgagtctaactgaatctatttgttctcctgttacctctatttgatccttg |
37131200 |
T |
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| Q |
222 |
ctatctccttttatagctgcactttccactcctgaata |
259 |
Q |
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| T |
37131201 |
ttttctccttgtatagctgtaccttctactcctgaata |
37131238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 37135289 - 37135158
Alignment:
| Q |
128 |
actcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttgctatct |
227 |
Q |
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||||||||||||||||| || |||||||||||| |||||| ||| |||||| ||| ||| || | |||||||||||| ||||||||||| ||| ||||| |
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| T |
37135289 |
actcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatct |
37135190 |
T |
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| Q |
228 |
ccttttatagctgcactttccactcctgaata |
259 |
Q |
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| T |
37135189 |
ccttttatagttgtaccttccactcctgaata |
37135158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 37125064 - 37125177
Alignment:
| Q |
146 |
acagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttgctatctccttttatagctgcactt |
245 |
Q |
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| T |
37125064 |
acagaatttctttcttagcagacatgtgagtctaactgagtctatttattctcctgtaacctccattttatccttgctatgtccttgtatagctgcactt |
37125163 |
T |
|
| Q |
246 |
tccactcctgaata |
259 |
Q |
| |
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||||||||| |||| |
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| T |
37125164 |
tccactcctaaata |
37125177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 37124937 - 37124986
Alignment:
| Q |
23 |
ccttatctcacacacagggacagggtaatgaggataaccagctacacaag |
72 |
Q |
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| T |
37124937 |
ccttatctcacacacagggacagggtaatgaggaatactagctacacaag |
37124986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 1194063 - 1193920
Alignment:
| Q |
116 |
cacttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttga |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||| || ||| ||||||||||||||| |||| |||||||||| |
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| T |
1194063 |
cacttcaccaacactcaccaattctgcatgacagaatttctttcttagcagaaatgtgagtctaactgagtctatttgttctcctgttatctctatttga |
1193964 |
T |
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| Q |
216 |
tctttgctatctccttttatagctgcactttccactcctgaata |
259 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1193963 |
tccttgctatctccttttatagctgcactttccactcctgaata |
1193920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 116 - 259
Target Start/End: Original strand, 31296978 - 31297121
Alignment:
| Q |
116 |
cacttcaccaacactcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttga |
215 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||||||||| || ||| |||||| | || ||| ||||||||||||||| |||| |||||||||| |
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| T |
31296978 |
cacttcaccaacactcaccaattctgcatgacataatttctttcttagcagagatgtgactctaactgagtctatttgttctcctgttatctctatttga |
31297077 |
T |
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| Q |
216 |
tctttgctatctccttttatagctgcactttccactcctgaata |
259 |
Q |
| |
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|| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31297078 |
tccttgctatctgcttttatagctgcactttccactcctgaata |
31297121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 20269221 - 20269090
Alignment:
| Q |
128 |
actcaccaaatctgcatgacagaatttctttctaagtagacatgtgagtttagctgcgtctatttgttctccagttacctctatttgatctttgctatct |
227 |
Q |
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|
||||||||||||||||| || |||||||||||| |||||| ||| |||||| ||| ||| || | |||||||||||| ||||||||||| ||| ||||| |
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| T |
20269221 |
actcaccaaatctgcataaccgaatttctttcttagtagagatgccagtttaactgagtcaatctcttctccagttacttctatttgatccttgttatct |
20269122 |
T |
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| Q |
228 |
ccttttatagctgcactttccactcctgaata |
259 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| |
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| T |
20269121 |
ccttttatagttgcaccttccactcctgaata |
20269090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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