View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_192 (Length: 276)
Name: NF10140A_low_192
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_192 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 29007362 - 29007622
Alignment:
| Q |
7 |
taaaagtgacttcaactgtgtatttcctttgtgaaggtgagaacaagaacgtgtttgaaggtgttaagagagctcgttttgtttatgcttacaatggtcg |
106 |
Q |
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| T |
29007362 |
taaaagtgacttcaactgtgtatttcctttgtgaaggggagaacaagaacgtgtttgaagatgttaagagagctcgttttgtttatgcttacaatggtca |
29007461 |
T |
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| Q |
107 |
acaatcttggaaggttagattctattatgcttttttaaaattaagataaatttgattttgtgtccattctaaggtagttcatttgaagttagttaatcaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
29007462 |
acaatcttggaaggttagattctattatgcttttttaaaattaagataaatttgattttatgtccattctgaggtagttcatttgaagttagttaatcaa |
29007561 |
T |
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| Q |
207 |
tcgtgtaatacacgtgttttagtgtttctgtttacactttcaaatttggttgtattttctt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29007562 |
tcgtgtaatacacgtgttttagtgtttctgtttacactttcaaatttggttgtatgttctt |
29007622 |
T |
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