View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_194 (Length: 275)
Name: NF10140A_low_194
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_194 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 13879697 - 13879887
Alignment:
| Q |
76 |
cagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
175 |
Q |
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| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaat |
13879796 |
T |
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| Q |
176 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacagagtgagattttcttgg |
268 |
Q |
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| T |
13879797 |
gcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgac--agtgagattttcttgg |
13879887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 13875477 - 13875640
Alignment:
| Q |
79 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
178 |
Q |
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| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
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| Q |
179 |
ggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
242 |
Q |
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| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttga |
13875640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 13879630 - 13879675
Alignment:
| Q |
6 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
51 |
Q |
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| T |
13879630 |
actcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 13885720 - 13885756
Alignment:
| Q |
206 |
gaggaagaaaggaggcgggaaaatgccattgtgttga |
242 |
Q |
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| T |
13885720 |
gaggaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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