View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_195 (Length: 275)

Name: NF10140A_low_195
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_195
NF10140A_low_195
[»] chr3 (1 HSPs)
chr3 (9-269)||(50157005-50157265)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 50157265 - 50157005
Alignment:
Q  9 aacagagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgatttc 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  50157265 aacaaagaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgatttc 50157166  T
Q  109 gattaaataattgaactcagttacagtaaaagtgacgagttttcaagttatgtatagaagacttttggataacaatgtaccagtgaatatgctgctcggc 208  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50157165 gattaaataattgaactcagttacagtaaaagtgacgagtgttcaagttatgtatagaatacttttggataacaatgtaccagtgaatatgctgctcggc 50157066  T
Q  209 aaaaaatcttgtccaacatcaacttttagagtgcattcaaaccattccgaaattctaacga 269  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50157065 aaaaaaacttgtccaacctcaacttttagagtgcattcaaaccattccgaaattctaacga 50157005  T

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