View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_196 (Length: 274)
Name: NF10140A_low_196
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_196 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 28519063 - 28519269
Alignment:
| Q |
1 |
tctctagcttaaaatttgtagatattgnnnnnnnctttgaata-ttttttgcatgtgtagccatggatgaagtacttttggtgtttaaaaatcaataccg |
99 |
Q |
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| T |
28519063 |
tctctagcttaaaatttgtagatattgtttttttcttcgaatatttttttgtatgtgtagccatggatgaagtacttttggtgtttaaaaatcaataccg |
28519162 |
T |
|
| Q |
100 |
taagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaagattgaaattagaacgcgacatagttgttgctcttttggac |
199 |
Q |
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| T |
28519163 |
taagttacacacaacaagatcatggaacttcattggtttacctctgactgccaagagaagattgaaattagaacgcgacatagttgttgctcttttggac |
28519262 |
T |
|
| Q |
200 |
acaggtt |
206 |
Q |
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||||||| |
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| T |
28519263 |
acaggtt |
28519269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 35006189 - 35006241
Alignment:
| Q |
212 |
cgttcactgagtgctttaaagaaattcctctagtttacagctcttttgatgtc |
264 |
Q |
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| T |
35006189 |
cgttcactgagtgctttaaagaaattcctctagtttacagctcttttgatgtc |
35006241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 12728832 - 12728763
Alignment:
| Q |
89 |
aatcaataccgtaagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaa |
158 |
Q |
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| T |
12728832 |
aatcaataccgcaagctacacacaacaagatcatgggactttattggattaccattgacagctaagagaa |
12728763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 34291311 - 34291425
Alignment:
| Q |
44 |
ttttttgcatgtgtagccatggatgaagtacttttggtgtttaaaaatcaataccgtaagctacacacaacaagatcatggaacttcattggtttacctc |
143 |
Q |
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||||||| ||||||||||||| ||||||| || | || || |||| | ||||| |||||||||||||||||||||||| | || ||||| |||||| |
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| T |
34291311 |
ttttttgtatgtgtagccatgaatgaagttctctcagtactttcaaataagtaccgcaagctacacacaacaagatcatgggattttattggattacctt |
34291410 |
T |
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| Q |
144 |
tgactgctaagagaa |
158 |
Q |
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|||| |||||||||| |
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| T |
34291411 |
tgacagctaagagaa |
34291425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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