View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_20 (Length: 439)
Name: NF10140A_low_20
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 2 - 424
Target Start/End: Original strand, 40668038 - 40668461
Alignment:
| Q |
2 |
caaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacacaagaatatag |
101 |
Q |
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| T |
40668038 |
caaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacacaagaatatag |
40668137 |
T |
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| Q |
102 |
tgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttggtaagtgcct |
201 |
Q |
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| T |
40668138 |
tgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttggtaagtgcct |
40668237 |
T |
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| Q |
202 |
tatgttgttttatcttatcttcaagtctaac-aagtatactttaaaggcactctaaggtttttattttgttgtagaaaatagtgaagcagttcttgattg |
300 |
Q |
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| T |
40668238 |
tatgttgttttatcttatcttcaagtctaacaaagtatactttaaaggcactctaagatttttattttgttgtagaaaatagtgaagcagttcttgattg |
40668337 |
T |
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| Q |
301 |
gtctcaaagatatggtattgcacttgggattgcaaagggattgcgttttctacatgaggaatgtcgaggtggtcctattattcatagggatatgagacca |
400 |
Q |
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| T |
40668338 |
gtctcaaagatatggtattgcacttgggattgcaaagggattgcgttttctacatgaggaatgtcgaggtggtcctattattcatagggatatgagacca |
40668437 |
T |
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| Q |
401 |
agcaatatacttctcactcatgat |
424 |
Q |
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| T |
40668438 |
agcaatatacttctcactcatgat |
40668461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 4301683 - 4301817
Alignment:
| Q |
57 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
156 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4301683 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
4301782 |
T |
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| Q |
157 |
tatttgcaataagtctcttcattggcatttatttg |
191 |
Q |
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| T |
4301783 |
tatttgcgataagtctcttcattggtatttatttg |
4301817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 4301817 - 4301874
Alignment:
| Q |
275 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
332 |
Q |
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| T |
4301817 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
4301874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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