View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_207 (Length: 269)
Name: NF10140A_low_207
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_207 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 36157 - 36420
Alignment:
| Q |
1 |
atggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagagat |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36157 |
atggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagagat |
36256 |
T |
|
| Q |
101 |
gttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgttt |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
36257 |
gttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgttt |
36356 |
T |
|
| Q |
201 |
atggttctgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
264 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357 |
atggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgact |
36420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 23573464 - 23573720
Alignment:
| Q |
1 |
atggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagagat |
100 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||||||| |||||||||| | ||| |||| ||||| |||| |||||||||||||||||||||| | |
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| T |
23573464 |
atggacatcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagct |
23573563 |
T |
|
| Q |
101 |
gttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgttt |
200 |
Q |
| |
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| |||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||| |
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| T |
23573564 |
gctgaaagacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgttt |
23573663 |
T |
|
| Q |
201 |
atggttctgttggttgtatcttgggcaatgttcatttcatatatgaagatgtagtgt |
257 |
Q |
| |
|
||| || ||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
23573664 |
atgtttacattggttgtatcttgggcaatgttcattacatatctgacgatgtagtgt |
23573720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 31815098 - 31814943
Alignment:
| Q |
69 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | |||| || ||||| |||||||| |||||||||| |
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| T |
31815098 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc |
31814999 |
T |
|
| Q |
169 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
224 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
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|
| T |
31814998 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 13507849 - 13507638
Alignment:
| Q |
1 |
atggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagagat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
13507849 |
atggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagagat |
13507750 |
T |
|
| Q |
101 |
gttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgttt |
200 |
Q |
| |
|
| |||| |||||||| ||||||||||||| ||| |||| |||||||| |||||| ||||||||||||||||||| ||||| ||| |||||||||||||| |
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|
| T |
13507749 |
gccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgttt |
13507650 |
T |
|
| Q |
201 |
atggttctgttg |
212 |
Q |
| |
|
||| || ||||| |
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|
| T |
13507649 |
atgattttgttg |
13507638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 13507400 - 13507611
Alignment:
| Q |
1 |
atggacatcctccatatgttcgtccaggagtagtaagaagagttgaagcatcaccttcgaatgtcacaaagcttccatgtgattgcaattgtgaagagat |
100 |
Q |
| |
|
||||||||||||| |||||||||| || || ||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
13507400 |
atggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagagat |
13507499 |
T |
|
| Q |
101 |
gttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatattcaagaaagcaggcaaatttgttt |
200 |
Q |
| |
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| |||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||| ||||| ||| | |||||||||||| |
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|
| T |
13507500 |
gctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgttt |
13507599 |
T |
|
| Q |
201 |
atggttctgttg |
212 |
Q |
| |
|
|||||| ||||| |
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| T |
13507600 |
atggttttgttg |
13507611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 7799543 - 7799387
Alignment:
| Q |
69 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
7799543 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc |
7799444 |
T |
|
| Q |
169 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
225 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
7799443 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 19398644 - 19398488
Alignment:
| Q |
69 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| ||| |||| || || |||||||| ||||||||||| || |||||||||| |
|
|
| T |
19398644 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc |
19398545 |
T |
|
| Q |
169 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
225 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
19398544 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 3585 - 3429
Alignment:
| Q |
69 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
3585 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
3486 |
T |
|
| Q |
169 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttggg |
225 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| ||||||| |
|
|
| T |
3485 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 22059491 - 22059336
Alignment:
| Q |
69 |
aagcttccatgtgattgcaattgtgaagagatgttgaaagacattactagaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||| | ||| || |||| || | ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
22059491 |
aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc |
22059392 |
T |
|
| Q |
169 |
tccaatattcaagaaagcaggcaaatttgtttatggttctgttggttgtatcttgg |
224 |
Q |
| |
|
| ||| ||||||| ||| || | || |||||||||||| ||||| |||| |||||| |
|
|
| T |
22059391 |
tacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
| Q |
63 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
51253217 |
gtcacaaagcttccatgtgattgcaattgtgaagag |
51253252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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