View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_209 (Length: 268)
Name: NF10140A_low_209
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_209 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 29583922 - 29584183
Alignment:
| Q |
1 |
aagctgtagttaatcagcgtagcaaattcataagttggttatgatgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttc |
100 |
Q |
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| T |
29583922 |
aagctgtagttaatcaacgtagcaaattcagaagttggttatgatgccttacagccacacaaggagcacaagtatagtgagttctacttgctctaagttc |
29584021 |
T |
|
| Q |
101 |
aagtgatgttgcagctccaattctttgaactaaatctgcatctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattatttg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29584022 |
aagtgatattgcagctccaattctttgaactaaatctgcatctctacatgcacaccacaaatgtagaatcaaagctttttcaagataacaaaattatttg |
29584121 |
T |
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| Q |
201 |
ttaacataaagtacaaaccaaatttacttgtcaaacatggaaggatttgacacgatatttag |
262 |
Q |
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| T |
29584122 |
ttaacataaagtacaaaccaaatttacttgtcaaacatggaaggatttgacacgatatttag |
29584183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 29610729 - 29610626
Alignment:
| Q |
45 |
tgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatctc |
144 |
Q |
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| T |
29610729 |
tgccttacagatacactaggggctaaagtatagtgagttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctc |
29610630 |
T |
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| Q |
145 |
taca |
148 |
Q |
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|||| |
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| T |
29610629 |
taca |
29610626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 25128780 - 25128882
Alignment:
| Q |
44 |
atgccttacagccacacaaggagcacaagtatagtgagttccacttgctctaagttcaagtgatgttgcagctccaattctttgaactaaatctgcatct |
143 |
Q |
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||||||||| || |||||||||||| | |||||||| |||| |||||| ||| |||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
25128780 |
atgccttaccgcgacacaaggagcaaagttatagtgaattccgcttgctttaacttcaagcgccgttgcagctccaattcttctaactaaatcagcatct |
25128879 |
T |
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| Q |
144 |
cta |
146 |
Q |
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||| |
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| T |
25128880 |
cta |
25128882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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