View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_223 (Length: 261)

Name: NF10140A_low_223
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_223
NF10140A_low_223
[»] chr2 (2 HSPs)
chr2 (3-249)||(31340024-31340270)
chr2 (3-249)||(31333294-31333540)
[»] chr3 (2 HSPs)
chr3 (42-218)||(1656879-1657055)
chr3 (217-249)||(7405914-7405946)
[»] chr4 (2 HSPs)
chr4 (3-218)||(644420-644647)
chr4 (154-188)||(546594-546628)
[»] chr8 (2 HSPs)
chr8 (152-218)||(28246588-28246654)
chr8 (217-249)||(25640066-25640098)
[»] scaffold0576 (1 HSPs)
scaffold0576 (217-249)||(8394-8426)
[»] chr7 (1 HSPs)
chr7 (217-249)||(4683724-4683756)
[»] chr6 (3 HSPs)
chr6 (217-249)||(15363623-15363655)
chr6 (180-218)||(11936570-11936608)
chr6 (180-218)||(11948550-11948588)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 31340270 - 31340024
Alignment:
Q  3 agaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340270 agaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcaca 31340171  T
Q  103 cataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340170 cataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaa 31340071  T
Q  203 ttcaaacttcatagcattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31340070 ttcaaacttcatagcattggatccaagttttcatgaactgtgatatt 31340024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 31333540 - 31333294
Alignment:
Q  3 agaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31333540 agaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgctca 31333441  T
Q  103 cataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31333440 cataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaa 31333341  T
Q  203 ttcaaacttcatagcattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31333340 ttcaaacttcatagcattggatccaagttttcatgaactgtgatatt 31333294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 1656879 - 1657055
Alignment:
Q  42 acaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttcagaaag 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1656879 acaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacataacatgatgagcatatatacaattacgttcagaaag 1656978  T
Q  142 aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656979 aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca 1657055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 7405946 - 7405914
Alignment:
Q  217 cattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||    
T  7405946 cattggatccaagttttcatgaactgtgatatt 7405914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 644420 - 644647
Alignment:
Q  3 agaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagctt------------aataacttattcat 90  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  644420 agaatttgttcaagtaatataagtcatggcaaagcgacaacaagcaatgcaatgcactccacaatcaatagcttgcattatatattaataacttattcat 644519  T
Q  91 ttgtcatgcacacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacatt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  644520 ttgtcatgcacacataacatgatgagcatatatacaattacgttaaaaaagagaacaaaagtaatttctcatagaagtaaatctgaaaaccaaaaacatt 644619  T
Q  191 ataaattcacaattcaaacttcatagca 218  Q
    | ||||||||||||||||||||||||||    
T  644620 agaaattcacaattcaaacttcatagca 644647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 546594 - 546628
Alignment:
Q  154 atttctcatagaagtaaatctgaaaacaaaaaaca 188  Q
    ||||||||||||||||||||||||||||| |||||    
T  546594 atttctcatagaagtaaatctgaaaacaataaaca 546628  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 28246654 - 28246588
Alignment:
Q  152 taatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246654 taatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagca 28246588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 25640066 - 25640098
Alignment:
Q  217 cattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||    
T  25640066 cattggatccaagttttcatgaactgtgatatt 25640098  T

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Target: scaffold0576 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 8394 - 8426
Alignment:
Q  217 cattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||    
T  8394 cattggatccaagttttcatgaactgtgatatt 8426  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 4683756 - 4683724
Alignment:
Q  217 cattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||    
T  4683756 cattggatccaagttttcatgaactgtgatatt 4683724  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 15363623 - 15363655
Alignment:
Q  217 cattggatccaagttttcatgaactgtgatatt 249  Q
    |||||||||||||||||||||||||||||||||    
T  15363623 cattggatccaagttttcatgaactgtgatatt 15363655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 11936608 - 11936570
Alignment:
Q  180 caaaaaacattataaattcacaattcaaacttcatagca 218  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  11936608 caaacaactttataaattcacaattcaaacttcatagca 11936570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 11948588 - 11948550
Alignment:
Q  180 caaaaaacattataaattcacaattcaaacttcatagca 218  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  11948588 caaacaactttataaattcacaattcaaacttcatagca 11948550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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