View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_226 (Length: 260)
Name: NF10140A_low_226
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_226 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 38700717 - 38700965
Alignment:
| Q |
12 |
gagacgtagaaagcgcaacaatatgttctggtaacaaaacactgaggtccgtgctaggcagtgattgtgttctggtaacaaaaccatcaagtgcaccatg |
111 |
Q |
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| T |
38700717 |
gagacgtagaaagcgcaacaatatgttctggtaacaaaacactgaggtccgtgctaggcagtgattgtgttctggtaacaaaaccatcaagtgcaccatg |
38700816 |
T |
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| Q |
112 |
aatttaatattttaccaattttactacataattgttattcttgacaaattcgattatggttctaatacgaagaatctctttgtataacctcatattgtat |
211 |
Q |
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| T |
38700817 |
aatttaatattttaccaattttactacataattgttattcttgacaaattcgattatggttctaatacgaagaatctctttgtataacctcatattgtat |
38700916 |
T |
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| Q |
212 |
tatttgtatgacctaatatgttatggaatactagctgcttattaattga |
260 |
Q |
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| T |
38700917 |
tatttgtatgacctaatatgttatggaatactagctgcttattaattga |
38700965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 9926968 - 9926886
Alignment:
| Q |
139 |
ataattgttattcttgacaaattcgattatggttctaatacgaagaatctctttgtataacctcatattgtattatttgtatga |
222 |
Q |
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| T |
9926968 |
ataattgttgttcttgacaaattcgattatggttttaatatgaaaaatctc-ttgcataacctcatgttcgattacttgtatga |
9926886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 12706917 - 12706976
Alignment:
| Q |
130 |
ttttactacataattgttattcttgacaaattcgattatggttctaatacgaagaatctc |
189 |
Q |
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| T |
12706917 |
ttttcctacataattgttgttgttgacaaattagattatgattctaatatgaagaatctc |
12706976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 31887792 - 31887744
Alignment:
| Q |
130 |
ttttactacataattgttattcttgacaaattcgattatggttctaata |
178 |
Q |
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| T |
31887792 |
tttttctacataattgttgttcttgacaaattggattgtagttctaata |
31887744 |
T |
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