View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_228 (Length: 259)
Name: NF10140A_low_228
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_228 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 5690125 - 5689881
Alignment:
| Q |
7 |
gatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgac |
106 |
Q |
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| T |
5690125 |
gatatgaagcaatctacagtttccattttggtgattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgac |
5690026 |
T |
|
| Q |
107 |
tggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatt |
206 |
Q |
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| T |
5690025 |
tggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatt |
5689926 |
T |
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| Q |
207 |
aaggatttgccacaagagcttcttggtaagcatgttgagccttct |
251 |
Q |
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| T |
5689925 |
aaggatttgccacaagagcttcttggtaaacatgttgagccttct |
5689881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 25914806 - 25914568
Alignment:
| Q |
7 |
gatatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgac |
106 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||| |||| || |||||||| || |||||||| |||||||| |||||| ||||||| |
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| T |
25914806 |
gatatgaagcaatctacagttttcacgttggagactatggtcaaatagctgtgcaaggaccttacctaacctat---gaggacacatatctaactgtgac |
25914710 |
T |
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| Q |
107 |
tggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatt |
206 |
Q |
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| T |
25914709 |
tggtggtactggaatttttgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaagggtatt |
25914610 |
T |
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| Q |
207 |
aaggatttgccacaagagcttcttggtaagcatgttgagcct |
248 |
Q |
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| T |
25914609 |
aaggatttgccacaagagcttcttggtaaaccagttgagcct |
25914568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 6792563 - 6792803
Alignment:
| Q |
8 |
atatgaagcaatctacagtttccattttggagattatggtcacttagcagttcaaggaccatatttaacctatcctgaggacacttatctagctgtgact |
107 |
Q |
| |
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|||||||||||| || ||||| |||||||||| |||||||| | | || ||||| | |||||||| ||| ||||| |||||| | ||||||||| |
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| T |
6792563 |
atatgaagcaatatatagtttttattttggagagtatggtcatatttctgtgcaaggttcttatttaacttatgaggaggatacttatttggctgtgact |
6792662 |
T |
|
| Q |
108 |
ggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtatta |
207 |
Q |
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| T |
6792663 |
ggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtatta |
6792762 |
T |
|
| Q |
208 |
aggatttgccacaagagcttcttggtaagcatgttgagcct |
248 |
Q |
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| T |
6792763 |
aggatttgccacatgagtttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 6800131 - 6800246
Alignment:
| Q |
105 |
actggtggttctggaatatttgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggta |
204 |
Q |
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|||||||| |||||||||||||||||||| | |||||||| ||| | ||||||||||| |||||||| ||| | || || ||||||||| | | |||| |
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| T |
6800131 |
actggtggaactggaatatttgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagctattttacacattttatcttatgggta |
6800230 |
T |
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| Q |
205 |
ttaaggatttgccaca |
220 |
Q |
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|||||||||||||||| |
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| T |
6800231 |
ttaaggatttgccaca |
6800246 |
T |
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