View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_229 (Length: 258)

Name: NF10140A_low_229
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_229
NF10140A_low_229
[»] chr2 (12 HSPs)
chr2 (5-258)||(7252077-7252330)
chr2 (35-74)||(33455859-33455898)
chr2 (47-102)||(33456023-33456078)
chr2 (47-101)||(3008422-3008476)
chr2 (35-84)||(3185935-3185985)
chr2 (35-95)||(10571004-10571065)
chr2 (51-100)||(36159483-36159532)
chr2 (42-85)||(1872057-1872101)
chr2 (45-93)||(5137476-5137524)
chr2 (64-108)||(10542067-10542111)
chr2 (35-102)||(13210553-13210621)
chr2 (35-102)||(14466399-14466467)
[»] chr6 (12 HSPs)
chr6 (39-100)||(2115298-2115359)
chr6 (37-113)||(19385558-19385633)
chr6 (34-101)||(1206153-1206220)
chr6 (41-102)||(24745752-24745814)
chr6 (30-84)||(10145734-10145789)
chr6 (35-102)||(3680039-3680107)
chr6 (18-94)||(7349442-7349518)
chr6 (35-83)||(7938928-7938976)
chr6 (45-101)||(9592383-9592439)
chr6 (35-102)||(13353228-13353296)
chr6 (47-95)||(24836860-24836908)
chr6 (35-102)||(33796353-33796421)
[»] chr1 (27 HSPs)
chr1 (36-84)||(20738713-20738761)
chr1 (37-107)||(40571584-40571653)
chr1 (35-101)||(41590515-41590580)
chr1 (44-101)||(7525050-7525107)
chr1 (45-102)||(13031126-13031183)
chr1 (45-113)||(10663126-10663194)
chr1 (45-101)||(17557708-17557764)
chr1 (39-83)||(31626233-31626277)
chr1 (23-95)||(32344733-32344805)
chr1 (45-101)||(41590214-41590270)
chr1 (37-100)||(347107-347170)
chr1 (39-102)||(13978831-13978894)
chr1 (45-101)||(19609169-19609226)
chr1 (53-105)||(102074-102126)
chr1 (35-95)||(19810986-19811046)
chr1 (39-95)||(36470740-36470796)
chr1 (45-84)||(347351-347390)
chr1 (35-100)||(29265982-29266048)
chr1 (41-75)||(29410162-29410196)
chr1 (35-75)||(19609462-19609503)
chr1 (39-99)||(29038642-29038703)
chr1 (35-100)||(30339071-30339136)
chr1 (38-102)||(39007147-39007212)
chr1 (35-87)||(40566052-40566105)
chr1 (35-102)||(4098392-4098459)
chr1 (45-93)||(15686106-15686154)
chr1 (45-85)||(21641405-21641445)
[»] chr4 (28 HSPs)
chr4 (44-91)||(47434690-47434737)
chr4 (37-102)||(46676680-46676745)
chr4 (39-85)||(17912820-17912866)
chr4 (23-84)||(24001542-24001603)
chr4 (51-102)||(43760646-43760697)
chr4 (35-82)||(49190168-49190215)
chr4 (46-100)||(7567378-7567431)
chr4 (35-95)||(39778524-39778586)
chr4 (67-108)||(30686089-30686130)
chr4 (35-102)||(22445479-22445547)
chr4 (35-90)||(26030351-26030407)
chr4 (39-83)||(31965067-31965111)
chr4 (37-108)||(55253338-55253409)
chr4 (35-93)||(24232046-24232105)
chr4 (41-108)||(28469606-28469673)
chr4 (63-113)||(37130153-37130203)
chr4 (35-95)||(39778359-39778421)
chr4 (47-85)||(50830704-50830742)
chr4 (37-90)||(28491130-28491183)
chr4 (39-95)||(38452501-38452558)
chr4 (38-102)||(40827695-40827760)
chr4 (51-95)||(3180862-3180906)
chr4 (53-85)||(5220742-5220774)
chr4 (51-95)||(9077484-9077528)
chr4 (23-86)||(17111606-17111670)
chr4 (35-95)||(29782201-29782261)
chr4 (45-101)||(30490939-30490995)
chr4 (49-85)||(49824634-49824670)
[»] chr3 (19 HSPs)
chr3 (37-108)||(1348867-1348938)
chr3 (42-93)||(4212836-4212887)
chr3 (39-102)||(23898233-23898296)
chr3 (39-84)||(10450148-10450193)
chr3 (35-102)||(35018502-35018570)
chr3 (45-85)||(43955324-43955364)
chr3 (42-102)||(50187399-50187459)
chr3 (37-94)||(10485102-10485160)
chr3 (39-81)||(34363379-34363421)
chr3 (47-101)||(38036009-38036063)
chr3 (17-85)||(4155368-4155437)
chr3 (44-85)||(10694940-10694981)
chr3 (57-102)||(27086617-27086662)
chr3 (57-102)||(47702421-47702466)
chr3 (35-102)||(16926938-16927006)
chr3 (45-81)||(39225010-39225046)
chr3 (37-69)||(43955509-43955541)
chr3 (39-95)||(54861594-54861650)
chr3 (51-103)||(55256560-55256612)
[»] chr5 (16 HSPs)
chr5 (47-100)||(35708276-35708329)
chr5 (43-90)||(43433693-43433741)
chr5 (35-85)||(32337545-32337595)
chr5 (37-100)||(2986003-2986067)
chr5 (44-107)||(13638496-13638558)
chr5 (46-101)||(16275304-16275359)
chr5 (37-84)||(38069563-38069610)
chr5 (45-95)||(28120618-28120668)
chr5 (35-84)||(15844500-15844549)
chr5 (45-102)||(30366674-30366731)
chr5 (38-83)||(38815688-38815733)
chr5 (59-95)||(8397040-8397076)
chr5 (45-85)||(22198986-22199026)
chr5 (35-86)||(27560679-27560731)
chr5 (45-85)||(31973135-31973175)
chr5 (34-74)||(40261052-40261092)
[»] scaffold0072 (1 HSPs)
scaffold0072 (44-100)||(24461-24516)
[»] chr7 (12 HSPs)
chr7 (45-100)||(6427025-6427081)
chr7 (41-75)||(21048690-21048724)
chr7 (35-113)||(24965964-24966042)
chr7 (35-100)||(8983942-8984006)
chr7 (25-105)||(7971320-7971400)
chr7 (45-85)||(38963368-38963408)
chr7 (35-94)||(39079916-39079975)
chr7 (34-67)||(47856101-47856134)
chr7 (23-95)||(252541-252613)
chr7 (35-102)||(6782888-6782956)
chr7 (39-83)||(21033809-21033853)
chr7 (35-75)||(25000500-25000540)
[»] chr8 (15 HSPs)
chr8 (35-107)||(25972288-25972368)
chr8 (45-100)||(30014156-30014211)
chr8 (45-95)||(5692901-5692951)
chr8 (64-113)||(37825288-37825337)
chr8 (39-95)||(29053723-29053779)
chr8 (39-102)||(38475774-38475838)
chr8 (45-92)||(5671184-5671231)
chr8 (35-90)||(31197654-31197709)
chr8 (39-85)||(10368684-10368730)
chr8 (45-107)||(25972087-25972148)
chr8 (39-100)||(12970439-12970500)
chr8 (40-101)||(30014320-30014380)
chr8 (35-102)||(11232183-11232251)
chr8 (35-102)||(11232418-11232486)
chr8 (37-101)||(30590511-30590575)
[»] scaffold1034 (1 HSPs)
scaffold1034 (35-100)||(811-877)
[»] scaffold0048 (1 HSPs)
scaffold0048 (35-95)||(81876-81937)
[»] scaffold0519 (1 HSPs)
scaffold0519 (35-102)||(1943-2011)
[»] scaffold0092 (1 HSPs)
scaffold0092 (35-102)||(5682-5750)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 7252330 - 7252077
Alignment:
Q  5 gcgggctggtctaatgattcttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaat 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7252330 gcgggcgggtctaatgattcttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaat 7252231  T
Q  105 gtcttccacataggaataaaggactcataatttgatgtaggtaagaagggttctggtaacattaacccagcatcaatagtttaaggatataataatacat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7252230 gtcttccacataggaataaaggactcataatttgatgtaggtaaaaagggttctggtaacattaacccagcatcaatagtttaaggatataataatacat 7252131  T
Q  205 ttctaagattttttacgatatactttcttggtttgcatgtggaaatgacattga 258  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  7252130 ttctaagagtttttacgatatactttcttggtttgcacgtggaaatgacattga 7252077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 33455898 - 33455859
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaac 74  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  33455898 tctgataccatcttagaatttgggttgagtctaactcaac 33455859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 33456078 - 33456023
Alignment:
Q  47 ttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||||||| ||||||||||||| |||||||||   ||||||| ||||||    
T  33456078 ttagaatttgggttgggcctaactcaaccttacaaaaccggtttgtaaggtgagga 33456023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 3008476 - 3008422
Alignment:
Q  47 ttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||||||| ||||||||||||| ||||||||   |||||||| |||||    
T  3008476 ttagaatttgggttgggcctaactcaaccttacaaaactggcttgtaaggtgagg 3008422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 3185985 - 3185935
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaac-cctacaaaac 84  Q
    ||||||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  3185985 tctgataccatcttaaaatttgggtcgagtctaactcaactcctacaaaac 3185935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 10571065 - 10571004
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    |||||||||||||||||| | | ||||||||||||| |||||| ||||||||  ||||||||    
T  10571065 tctgataccatcttagaaatcgtggttgagcctaacacaaccccacaaaaccggcttgtaag 10571004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 36159532 - 36159483
Alignment:
Q  51 aatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||| |||||||||||||||| |||| ||||||| ||||||||| ||||    
T  36159532 aatttaggttgagcctaactcatccctgcaaaaccgacttgtaaggtgag 36159483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 1872101 - 1872057
Alignment:
Q  42 ccatcttagaatttgggttgagcctaactcaacc-ctacaaaacc 85  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||    
T  1872101 ccatcttagaatttgggttgggcctaactcgaccgctacaaaacc 1872057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 5137524 - 5137476
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgta 93  Q
    |||||||||||||||||  || ||||||||| |||||||||| ||||||    
T  5137524 tcttagaatttgggttggaccaaactcaaccgtacaaaaccagcttgta 5137476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 10542067 - 10542111
Alignment:
Q  64 cctaactcaaccctacaaaaccaacttgtaagatgaggaatgtct 108  Q
    ||||||||| || |||||||||| ||||||||||||||| |||||    
T  10542067 cctaactcatccttacaaaaccagcttgtaagatgaggagtgtct 10542111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 13210621 - 13210553
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||||||| ||||| ||||||| | |||| |||||||| || ||| || ||||||    
T  13210621 tctgataccatcttagaatttgtggttgggcctaacacgaccccacaaaaccgacctgtgaggtgagga 13210553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 14466399 - 14466467
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||  |||||||| ||||||    
T  14466399 tctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgagga 14466467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 2115359 - 2115298
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  2115359 ataccatcttagaattttggttgagcctaactcaaccctacaacaccaacttataagatgag 2115298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 19385633 - 19385558
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtcttccac 113  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| ||| ||||  |||||| ||||    
T  19385633 tgataccatcttagaatttgggt-gagcctaactcaaccatacaaaaccagcttgaaaggtgagagatgtctcccac 19385558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 1206153 - 1206220
Alignment:
Q  34 ttctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||||||||||||||||||||  ||||||| | || |||||| ||| |||||||| |||||    
T  1206153 ttctgataccatcttagaatttgggttggacctaacttagccttacaaatccagcttgtaaggtgagg 1206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 24745752 - 24745814
Alignment:
Q  41 accatcttagaatttgggttgagcctaactcaaccc-tacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||  |||||||| ||||||    
T  24745752 accatcttagaatttgggttgagccgaactcaaccctttcaaaaccggcttgtaaggtgagga 24745814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 10145734 - 10145789
Alignment:
Q  30 cagattctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaac 84  Q
    |||| ||||||| |||||||||| ||| ||||||||||||| ||||||||||||||    
T  10145734 cagactctgatatcatcttagaaattgtggttgagcctaacacaaccctacaaaac 10145789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 3680107 - 3680039
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| ||| ||||| ||||||| |||||| |||||| | |||||| ||| |||||    
T  3680107 tctgataccatcttagaaattgtggttgggcctaacacaaccccacaaaatcgacttgtgagaggagga 3680039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 7349518 - 7349442
Alignment:
Q  18 atgattcttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaa 94  Q
    |||| ||||||| ||| || ||||||| |||||||||||| | | ||||| |||||||||||| |||  ||||||||    
T  7349518 atgaatcttggatagactcggataccaacttagaatttggatcgggcctacctcaaccctacagaactgacttgtaa 7349442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 7938928 - 7938976
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaa 83  Q
    |||||||  |||||| ||||||||||  |||||||||||||||||||||    
T  7938928 tctgatagaatcttaaaatttgggtttggcctaactcaaccctacaaaa 7938976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 9592383 - 9592439
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    |||||||||||||| || |||| |||||||| || ||||||  ||||||||||||||    
T  9592383 tcttagaatttgggatgggcctgactcaaccttagaaaaccggcttgtaagatgagg 9592439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 13353296 - 13353228
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||  |||||||| ||||||    
T  13353296 tctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgagga 13353228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 24836860 - 24836908
Alignment:
Q  47 ttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    |||||||||||||||| |||||| ||||| ||||||||  |||||||||    
T  24836860 ttagaatttgggttgaacctaacccaaccatacaaaacagacttgtaag 24836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 33796421 - 33796353
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||  |||||||| ||||||    
T  33796421 tctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgagga 33796353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 20738713 - 20738761
Alignment:
Q  36 ctgataccatcttagaatttgggttgagcctaactcaaccctacaaaac 84  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20738713 ctgataccatcttagaatttgggatgagcctaactcaaccctacaaaac 20738761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 40571653 - 40571584
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtc 107  Q
    ||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||| |||||| ||||    
T  40571653 tgataccatctta-aatttggattgggcctaactcaaccttacaaaaccaacttgtaaggtgaggattgtc 40571584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 41590515 - 41590580
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| |||||  ||||||||||||||    
T  41590515 tctgataccatcttagaatttgggttg-gcctaactcaaccttacgaaaccggcttgtaagatgagg 41590580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 7525107 - 7525050
Alignment:
Q  44 atcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    |||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||    
T  7525107 atcttagaatttggattgagcctaactcaaccttacaaaaccagcttgtaaggtgagg 7525050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 13031126 - 13031183
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||  |||||||||||||||||||||||  ||||||| ||||||    
T  13031126 tcttagaatttgggttggacctaactcaaccctacaaaaccagtttgtaaggtgagga 13031183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 10663194 - 10663126
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtcttccac 113  Q
    |||||||||||||||||  |||||  ||| ||||||||||||||||||||| |||| ||||||| ||||    
T  10663194 tcttagaatttgggttggacctaatgcaatcctacaaaaccaacttgtaaggtgagaaatgtctcccac 10663126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 17557708 - 17557764
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||||||||| ||||||||||||| ||||||| || |||||||| |||||    
T  17557708 tcttagaatttgggttgggcctaactcaaccttacaaaatcagcttgtaaggtgagg 17557764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 31626233 - 31626277
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaa 83  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  31626233 ataccatcttagaatttgggttggacctaactcaaccctacaaaa 31626277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 32344733 - 32344805
Alignment:
Q  23 tcttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||| ||| ||| ||||||||||| || ||||||||| ||||||||||||||| |||| || ||||||||    
T  32344733 tcttggatagactcttataccatcttaaaaattgggttgaacctaactcaaccctaaaaaatcagcttgtaag 32344805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 41590214 - 41590270
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  41590214 tcttagaatttaggttgggccaaactcaaccttacaaaaccagcttgtaagatgagg 41590270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 347170 - 347107
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||| ||| |||||||||||||||  |||||||||||| |||||||||| |||||||| ||||    
T  347170 tgataacatattagaatttgggttggccctaactcaaccttacaaaaccagcttgtaaggtgag 347107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 13978894 - 13978831
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||| |||||||||||| |||||||| |||| ||||||||  ||||||||| ||||||    
T  13978894 ataccatctttgaatttgggttgtgcctaacttaaccttacaaaactgacttgtaaggtgagga 13978831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 19609169 - 19609226
Alignment:
Q  45 tcttagaattt-gggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||| |||||||||||||||||||| |||||||||  |||||||| |||||    
T  19609169 tcttagaattttgggttgagcctaactcaaccttacaaaaccggcttgtaaggtgagg 19609226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 102074 - 102126
Alignment:
Q  53 tttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatg 105  Q
    ||||| || ||||||||||||||||||||||||  |||||||| |||||||||    
T  102074 tttggatttagcctaactcaaccctacaaaaccggcttgtaaggtgaggaatg 102126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 19810986 - 19811046
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||||||||||| ||||||||||  |||||| |||||| |||||||||  ||||||||    
T  19810986 tctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgtaag 19811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 36470740 - 36470796
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||||||||||||  |||| | ||||||||||||||| ||||||||||| ||||    
T  36470740 ataccatcttagaattcaggtttaacctaactcaaccctataaaaccaacttataag 36470796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 347390 - 347351
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaac 84  Q
    |||||||||||||||||| |||||||||||| ||||||||    
T  347390 tcttagaatttgggttgaacctaactcaaccttacaaaac 347351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 29266048 - 29265982
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||| |||||||| ||||    
T  29266048 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccagcttgtaaggtgag 29265982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 29410162 - 29410196
Alignment:
Q  41 accatcttagaatttgggttgagcctaactcaacc 75  Q
    |||||||||||||||||||| ||||||||||||||    
T  29410162 accatcttagaatttgggttcagcctaactcaacc 29410196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 19609462 - 19609503
Alignment:
Q  35 tctgataccatcttagaattt-gggttgagcctaactcaacc 75  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  19609462 tctgataccatcttagaatttcgggttgtgcctaactcaacc 19609503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 29038703 - 29038642
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaa-ccctacaaaaccaacttgtaagatga 99  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||||||   ||||||||||||    
T  29038703 ataccatcttagaatttggattgggcctcactcaacccctacaaaactggcttgtaagatga 29038642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 30339071 - 30339136
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||| ||| ||| ||||| ||||||| ||||||||| |||||| || ||| ||||||||||||    
T  30339071 tctgataacatattaaaatttaggttgagtctaactcaatcctacagaatcaatttgtaagatgag 30339136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 39007212 - 39007147
Alignment:
Q  38 gataccatcttagaatttgggttgagcctaactcaac-cctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||||||| |  |||||||||||   |||||||||| | |||||||||||||    
T  39007212 gataccatcttagaatttgggtaggtcctaactcaacatttacaaaaccagcatgtaagatgagga 39007147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 40566052 - 40566105
Alignment:
Q  35 tctgataccatcttagaa-tttgggttgagcctaactcaaccctacaaaaccaa 87  Q
    |||||||||||||||||| ||||||||| || |||| ||||| |||||||||||    
T  40566052 tctgataccatcttagaattttgggttgggcataacccaaccttacaaaaccaa 40566105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 4098392 - 4098459
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||| ||||||| | | ||||| ||||||| |||||| |||||||||||||||||| ||||||    
T  4098392 tctgataccaacttagaaatcgtggttgggcctaacacaaccc-acaaaaccaacttgtaaggtgagga 4098459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 15686106 - 15686154
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgta 93  Q
    ||||||||| ||||||  ||| ||||||||||||||||||| |||||||    
T  15686106 tcttagaatatgggttaggcccaactcaaccctacaaaaccgacttgta 15686154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 21641405 - 21641445
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  21641405 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 21641445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 47434737 - 47434690
Alignment:
Q  44 atcttagaatttgggttgagcctaactcaaccctacaaaaccaacttg 91  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47434737 atcttagaatttgggttgaacctaactcaaccctacaaaaccaacttg 47434690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 46676745 - 46676680
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||| ||||||| |||||||||||  ||||||||||||||||||||||| |||||||| ||||||    
T  46676745 tgatatcatcttaaaatttgggttggacctaactcaaccctacaaaaccatcttgtaaggtgagga 46676680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 17912866 - 17912820
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  17912866 ataccatcttaaaatttgggttgggcctaactcaaccctacaaaacc 17912820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 24001603 - 24001542
Alignment:
Q  23 tcttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaac 84  Q
    ||||||| ||| |||||||| |||||||||||||||||| || |||||||||| ||||||||    
T  24001603 tcttggatagactctgatactatcttagaatttgggttgggcttaactcaaccttacaaaac 24001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 43760697 - 43760646
Alignment:
Q  51 aatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| ||||||    
T  43760697 aatttgggttgagtctaactcaaccctacaataccaacttataaggtgagga 43760646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 49190168 - 49190215
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaa 82  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  49190168 tctgataccatcttagaatttgggttgagccaaactcaatcttacaaa 49190215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 7567431 - 7567378
Alignment:
Q  46 cttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||    
T  7567431 cttagaatttgggttg-gcctaattcaacccttcaaaaccaacttgtaaggtgag 7567378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 39778524 - 39778586
Alignment:
Q  35 tctgataccatcttagaattt-gggttgagcctaactcaaccc-tacaaaaccaacttgtaag 95  Q
    ||||||||||||||| ||||| |||||||||||||||| |||| | |||||||||||||||||    
T  39778524 tctgataccatcttaaaattttgggttgagcctaactcgaccctttcaaaaccaacttgtaag 39778586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 30686130 - 30686089
Alignment:
Q  67 aactcaaccctacaaaaccaacttgtaagatgaggaatgtct 108  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  30686130 aactcaaccctacaaaaccatcttgtaacatgaggaatgtct 30686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 22445547 - 22445479
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||||||| ||||| | ||||| |||||| |||||||| ||||||| | ||||||    
T  22445547 tctgataccatcttagaatttgtggttgggtctaacacaaccccacaaaaccgacttgtagggtgagga 22445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 26030407 - 26030351
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaactt 90  Q
    |||||||||||||||||| ||| |||||| | |||||||||||||||||| ||||||    
T  26030407 tctgataccatcttagaaattgtggttgaacttaactcaaccctacaaaatcaactt 26030351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 31965067 - 31965111
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaa 83  Q
    ||||||| |||||||||| |||||||||||||||||| |||||||    
T  31965067 ataccatattagaatttgagttgagcctaactcaaccttacaaaa 31965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 55253409 - 55253338
Alignment:
Q  37 tgataccatcttagaatttggg-ttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtct 108  Q
    ||||||||| ||||||||| || |||||| |||||||||| ||||||||| ||||||||| |||||| |||||    
T  55253409 tgataccatattagaattttggcttgagc-taactcaaccttacaaaaccgacttgtaaggtgaggactgtct 55253338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 24232046 - 24232105
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccc-tacaaaaccaacttgta 93  Q
    |||||| ||||| |||||||| ||||| |||||||||||||| ||||||||| |||||||    
T  24232046 tctgatgccatcatagaatttaggttgggcctaactcaacccttacaaaaccgacttgta 24232105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 28469673 - 28469606
Alignment:
Q  41 accatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtct 108  Q
    |||||| || |||||| |||  ||| |||||||||||||||||||| ||||||| |||| ||||||||    
T  28469673 accatcctataatttgtgtttggccaaactcaaccctacaaaaccatcttgtaacatgacgaatgtct 28469606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 37130153 - 37130203
Alignment:
Q  63 gcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtcttccac 113  Q
    |||||| ||||||||||||||||  |||||||||||||| || ||||||||    
T  37130153 gcctaagtcaaccctacaaaaccggcttgtaagatgagggatatcttccac 37130203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 39778359 - 39778421
Alignment:
Q  35 tctgataccatcttagaattt-gggttgagcctaactcaaccc-tacaaaaccaacttgtaag 95  Q
    |||||||||| |||| ||||| |||||| |||||||||||||| |||||||||| ||||||||    
T  39778359 tctgataccagcttaaaattttgggttgggcctaactcaacccttacaaaaccagcttgtaag 39778421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 50830704 - 50830742
Alignment:
Q  47 ttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  50830704 ttagaatttgggttgggcctaactcaaccttacaaaacc 50830742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 28491183 - 28491130
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaactt 90  Q
    |||||| |||||||||||||| || ||||||||||||| | |||||||| ||||    
T  28491183 tgatactatcttagaatttggattaagcctaactcaactccacaaaaccgactt 28491130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 38452501 - 38452558
Alignment:
Q  39 ataccatcttagaatttgggtt-gagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||||||||||||||| || | | ||||||||| || ||||||||||||||||||    
T  38452501 ataccatcttagaatttggcttagggtctaactcaatcccacaaaaccaacttgtaag 38452558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 40827695 - 40827760
Alignment:
Q  38 gataccatcttagaatttgggttgagcctaactcaaccc-tacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||| ||||| ||| |||||||||| ||||| ||||||| || |||||||| ||||||    
T  40827695 gataccatcttaaaatttaggtcgagcctaacttaacccttacaaaatcagcttgtaaggtgagga 40827760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 3180862 - 3180906
Alignment:
Q  51 aatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||| ||||| |||||||||||| |||||||||||| |||||||    
T  3180862 aattttggttgggcctaactcaactctacaaaaccaaattgtaag 3180906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 5220774 - 5220742
Alignment:
Q  53 tttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||| |||||||||||||||||||||||||    
T  5220774 tttgggtggagcctaactcaaccctacaaaacc 5220742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 9077484 - 9077528
Alignment:
Q  51 aatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||| |||||||||||| | |||||||||||||| |||||||||    
T  9077484 aattttggttgagcctaatttaaccctacaaaaccgacttgtaag 9077528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 17111670 - 17111606
Alignment:
Q  23 tcttggacagattctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaacca 86  Q
    ||||||| ||| |||||||||||||||||| | | ||||| ||||||| |||||| |||||||||    
T  17111670 tcttggaaagactctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacca 17111606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 29782261 - 29782201
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||| ||||| | ||||||| || ||||||||| || ||||||||| |||||||||||    
T  29782261 tctgatatcatctaataatttggatttagcctaactaaatcctacaaaatcaacttgtaag 29782201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 30490939 - 30490995
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||||||||| ||||||||||||| ||| ||| |  |||||||| |||||    
T  30490939 tcttagaatttgggttgggcctaactcaaccttacgaaaacggcttgtaaggtgagg 30490995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 49824670 - 49824634
Alignment:
Q  49 agaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||||  |||||||||||||||||||||||    
T  49824670 agaatttgggtttggcctaactcaaccctacaaaacc 49824634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 1348867 - 1348938
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtct 108  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||||||||| | |||| |||||||||||||||    
T  1348867 tgatatcatcttaaaatttgggttgagtctaactcaaccatacaaaaccgatttgtgagatgaggaatgtct 1348938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 4212887 - 4212836
Alignment:
Q  42 ccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgta 93  Q
    |||||||| || ||||||||||||||| |||||||||||||||| |||||||    
T  4212887 ccatcttaaaaattgggttgagcctaattcaaccctacaaaaccgacttgta 4212836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 23898296 - 23898233
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||||||||||||||  |||||||| ||||| | |||||||||| ||||| ||||||    
T  23898296 ataccatcttagaatttgggttaggcctaacttaaccccataaaaccaactggtaaggtgagga 23898233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 10450193 - 10450148
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaac 84  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||    
T  10450193 ataccatcttagaatttgggttttgcctaactcaaccctataaaac 10450148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 35018570 - 35018502
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||| |||||||||||||| ||||| ||||||||| ||| |||||| ||| |||||||| ||||||    
T  35018570 tctgatatcatcttagaatttgtggttgggcctaactcgaccttacaaacccagcttgtaaggtgagga 35018502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 43955324 - 43955364
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  43955324 tcttagaatttgggttgagcctaactcaaccttataaaacc 43955364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 50187399 - 50187459
Alignment:
Q  42 ccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||||||| |||| ||||||||||||| ||| ||||  ||||||||| ||||||    
T  50187399 ccatcttagaatttgagttgggcctaactcaaccttactaaactgacttgtaaggtgagga 50187459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 10485160 - 10485102
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactc-aaccctacaaaaccaacttgtaa 94  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||||||||  ||||||||    
T  10485160 tgataccatattagaatttgggttaggcctaactcaaaccctacaaaactgacttgtaa 10485102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 34363379 - 34363421
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaa 81  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||    
T  34363379 ataccatcttaaaattttggttgagactaactcaaccctacaa 34363421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 38036009 - 38036063
Alignment:
Q  47 ttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    |||||||||||||||| | |||||||||  ||||||||| ||||||||| |||||    
T  38036009 ttagaatttgggttgaacttaactcaactttacaaaaccgacttgtaaggtgagg 38036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 4155437 - 4155368
Alignment:
Q  17 aatgattcttggacagattctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaacc 85  Q
    ||||| ||||||| ||| |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||    
T  4155437 aatgaatcttggagagactctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaacc 4155368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 10694981 - 10694940
Alignment:
Q  44 atcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    |||||||||||||| |||| |||||||||| |||||||||||    
T  10694981 atcttagaatttggattgaacctaactcaatcctacaaaacc 10694940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 27086662 - 27086617
Alignment:
Q  57 ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||| ||||||| |||| | |||||||||||||||||||||||||    
T  27086662 ggttgggcctaacacaactccacaaaaccaacttgtaagatgagga 27086617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 47702421 - 47702466
Alignment:
Q  57 ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||| ||||||| |||||| ||||||||| |||||||||||||||    
T  47702421 ggttgggcctaacacaaccccacaaaaccagcttgtaagatgagga 47702466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 16926938 - 16927006
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | |||||||| |||| |||||| ||||||||  ||||| |||||||||    
T  16926938 tctgataccatcttagaaatcgtggttgagcttaacacaaccccacaaaaccggcttgtgagatgagga 16927006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 39225010 - 39225046
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaa 81  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  39225010 tcttagaatttgggttgggcctaactcaaccttacaa 39225046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 43955509 - 43955541
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaac 69  Q
    |||||||| ||||||||||||||||||||||||    
T  43955509 tgataccaacttagaatttgggttgagcctaac 43955541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 54861650 - 54861594
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||||||| ||||||||||| || ||||||||||  ||||||| | ||||||||    
T  54861650 ataccatcttaaaatttgggttgggcgtaactcaacctaacaaaactagcttgtaag 54861594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 55256612 - 55256560
Alignment:
Q  51 aatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaa 103  Q
    |||||||||||   | ||||||| ||||||||||||||||||||| |||||||    
T  55256612 aatttgggttggaacaaactcaagcctacaaaaccaacttgtaaggtgaggaa 55256560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 35708276 - 35708329
Alignment:
Q  47 ttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||||||||| | | |||||||||||| |||||||||||||||||||||||    
T  35708276 ttagaatttgggtcgggtctaactcaacccaacaaaaccaacttgtaagatgag 35708329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 43433693 - 43433741
Alignment:
Q  43 catcttagaatttgggttgagcctaactcaa-ccctacaaaaccaactt 90  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43433693 catcttagaatttgggttgggcctaactcaacccctacaaaaccaactt 43433741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 32337595 - 32337545
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||| ||||||||||||||| ||||||  |||||||||||||||    
T  32337595 tctgataccatattagaatttgggttgggcctaatacaaccctacaaaacc 32337545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 2986003 - 2986067
Alignment:
Q  37 tgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    |||||||||||||||| | | ||||||||||||| |||||| ||||| |||||||||||| ||||    
T  2986003 tgataccatcttagaaatggtggttgagcctaacacaaccccacaaatccaacttgtaaggtgag 2986067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 13638496 - 13638558
Alignment:
Q  44 atcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtc 107  Q
    |||||| ||||| |||||   ||||||||||||||||||||| |||||||||||||||| ||||    
T  13638496 atcttaaaattttggttggaactaactcaaccctacaaaacc-acttgtaagatgaggattgtc 13638558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 16275359 - 16275304
Alignment:
Q  46 cttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||||||| || | ||||||||||| |||||||||| |||||||| |||||    
T  16275359 cttagaatttgggctgggtctaactcaaccttacaaaaccaccttgtaaggtgagg 16275304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 38069563 - 38069610
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaac 84  Q
    ||||||||| ||||||||||||||| ||||||||||||| || |||||    
T  38069563 tgataccatattagaatttgggttgggcctaactcaaccttataaaac 38069610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 28120668 - 28120618
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||| |||||||||||||||||||||| ||| |||||||||  |||||||    
T  28120668 tcttataatttgggttgagcctaactcatcccaacaaaaccagattgtaag 28120618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 15844500 - 15844549
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaac 84  Q
    ||||| ||||||||| ||||||||||| ||||||||||| | ||||||||    
T  15844500 tctgacaccatcttaaaatttgggttgggcctaactcaatcttacaaaac 15844549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 30366731 - 30366674
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||||| ||| ||||||||||||| |||||| ||  |||||||| ||||||    
T  30366731 tcttagaatttggtttgggcctaactcaaccttacaaagccggcttgtaaggtgagga 30366674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 38815688 - 38815733
Alignment:
Q  38 gataccatcttagaatttgggttgagcctaactcaaccctacaaaa 83  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  38815688 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 38815733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 8397076 - 8397040
Alignment:
Q  59 ttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    |||||||||||||||||||||||||||  ||||||||    
T  8397076 ttgagcctaactcaaccctacaaaaccggcttgtaag 8397040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 22198986 - 22199026
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  22198986 tcttaaaatttgggttgggcctaactcaaccttacaaaacc 22199026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 27560679 - 27560731
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccc-tacaaaacca 86  Q
    |||||||||||||||||||| |||| ||||||||||  |||| ||||||||||    
T  27560679 tctgataccatcttagaattcgggtcgagcctaactttacccttacaaaacca 27560731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 31973135 - 31973175
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||||||||| |||||||| |||| |||||||||    
T  31973135 tcttagaatttgggttgggcctaactgaaccttacaaaacc 31973175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 40261052 - 40261092
Alignment:
Q  34 ttctgataccatcttagaatttgggttgagcctaactcaac 74  Q
    |||||||||||| ||||||||||||||| |||||| |||||    
T  40261052 ttctgataccatattagaatttgggttgggcctaattcaac 40261092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 24461 - 24516
Alignment:
Q  44 atcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||    
T  24461 atcttagaatttgtgttgagcctaactc-accatacaaaaccagcttgtaagatgag 24516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 6427025 - 6427081
Alignment:
Q  45 tcttagaattt-gggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||    
T  6427025 tcttagaattttgggttgagcctaactcaatcttacaaaaccaacttgtaaggtgag 6427081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 21048690 - 21048724
Alignment:
Q  41 accatcttagaatttgggttgagcctaactcaacc 75  Q
    |||||||||||||||||||||||||||||||||||    
T  21048690 accatcttagaatttgggttgagcctaactcaacc 21048724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 24965964 - 24966042
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtcttccac 113  Q
    |||||||| |||| | |||||||||||  || |||||||||||||||||||||| |||||| ||||  |||||| ||||    
T  24965964 tctgatactatctcaaaatttgggttggacccaactcaaccctacaaaaccaacgtgtaaggtgagagatgtctcccac 24966042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 8983942 - 8984006
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||||| ||||||||||||||||| | |||| ||||||||  |||||||||||||||| ||||    
T  8983942 tctgataccttcttagaatttgggttg-gactaattcaacccttaaaaaccaacttgtaaggtgag 8984006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 7971400 - 7971320
Alignment:
Q  25 ttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatg 105  Q
    ||||| |||||||||||  ||||||| ||||| ||||| |||||||||||  ||||||||  ||||||||| ||| |||||    
T  7971400 ttggatagattctgataatatcttaggatttgtgttgaacctaactcaactttacaaaactgacttgtaaggtgacgaatg 7971320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 38963368 - 38963408
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  38963368 tcttagaatttgggttgagcctaactcaaccttaccaaacc 38963408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 39079916 - 39079975
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaa 94  Q
    |||||| |||||||| ||||||||||| |||||||| |||| |||||||||  |||||||    
T  39079916 tctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgtaa 39079975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 47856134 - 47856101
Alignment:
Q  34 ttctgataccatcttagaatttgggttgagccta 67  Q
    ||||| ||||||||||||||||||||||||||||    
T  47856134 ttctgttaccatcttagaatttgggttgagccta 47856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 252613 - 252541
Alignment:
Q  23 tcttggacagattctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||| ||| |||  |||| ||||||||||||| ||| |||||||||||| ||||| | ||| ||||||||    
T  252613 tcttggatagactctagtaccctcttagaatttggattgggcctaactcaactctacatagccagcttgtaag 252541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 6782956 - 6782888
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    ||||||||||| |||||| | | ||||||||||||| |||||| ||||||||  |||||||| ||||||    
T  6782956 tctgataccatgttagaaatcgtggttgagcctaacacaaccccacaaaaccggcttgtaaggtgagga 6782888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 21033809 - 21033853
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaa 83  Q
    |||||| ||||||||||  |||||||||||||||||| |||||||    
T  21033809 ataccaacttagaatttcagttgagcctaactcaaccttacaaaa 21033853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 25000540 - 25000500
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaacc 75  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  25000540 tctgataccatcttagaattttggttgagtttaactcaacc 25000500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 25972288 - 25972368
Alignment:
Q  35 tctgataccatcttagaatttgggttgagc--------ctaactcaaccctacaaaaccaacttgtaagatgaggaatgtc 107  Q
    ||||||||||||||||||||||||||| ||        |||||||||||||||||||||  |||||||| |||||||||||    
T  25972288 tctgataccatcttagaatttgggttgtgcagttgggcctaactcaaccctacaaaacctgcttgtaaggtgaggaatgtc 25972368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 30014156 - 30014211
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||||    
T  30014156 tcttaaaatttaggttgggtctaactcaaccctacaaaaccgacttgtaagatgag 30014211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 5692901 - 5692951
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||| |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  5692901 tcttaaaatttgggttaagcttaactcaaccctacaaaactaacttgtaag 5692951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 37825337 - 37825288
Alignment:
Q  64 cctaactcaaccctacaaaaccaacttgtaagatgaggaatgtcttccac 113  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  37825337 cctaactcaaccgtacaaaaccaacttgtaaggtgaagaatgtctcccac 37825288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 29053723 - 29053779
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    ||||||||||||||||| ||||||   |||||||||| |||||||| ||||||||||    
T  29053723 ataccatcttagaatttcggttgaatttaactcaaccttacaaaactaacttgtaag 29053779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 38475838 - 38475774
Alignment:
Q  39 ataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| ||||| ||||||| |||||||||||||||  ||||| || ||||||    
T  38475838 ataccatcttagaatttgtggttgggcctaacacaaccctacaaaaccggcttgtgaggtgagga 38475774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 5671184 - 5671231
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgt 92  Q
    ||||||||||| |||| ||| ||||||||||||||||||| |||||||    
T  5671184 tcttagaatttaggttaagcttaactcaaccctacaaaactaacttgt 5671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 31197709 - 31197654
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaactt 90  Q
    |||||||||||||||||| |  ||||| ||||||| ||||||||||||||| ||||    
T  31197709 tctgataccatcttagaaatctggttgggcctaacacaaccctacaaaaccgactt 31197654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 10368730 - 10368684
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaacc 85  Q
    |||| |||||| ||||||||||| | |||||||||||||||||||||    
T  10368730 atactatcttaaaatttgggttgggactaactcaaccctacaaaacc 10368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 25972087 - 25972148
Alignment:
Q  45 tcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgaggaatgtc 107  Q
    |||||||| |||||||| ||||| |||||||||||||||||| ||||| | ||||||| ||||    
T  25972087 tcttagaacttgggttg-gcctagctcaaccctacaaaaccagcttgtgaaatgaggagtgtc 25972148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 12970439 - 12970500
Alignment:
Q  39 ataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgag 100  Q
    ||||||||||||||||||| ||| || ||||| |||||| ||||| || |||||||| ||||    
T  12970439 ataccatcttagaatttggattgtgcttaactaaaccctgcaaaatcagcttgtaaggtgag 12970500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 30014320 - 30014380
Alignment:
Q  40 taccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    |||||||||| ||||||||||||| ||||||||||| ||| ||||||  ||||||| |||||    
T  30014320 taccatcttaaaatttgggttgag-ctaactcaaccttacgaaaccaggttgtaaggtgagg 30014380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 11232183 - 11232251
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||  |||||||| ||||||    
T  11232183 tctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgagga 11232251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 11232418 - 11232486
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||  |||||||| ||||||    
T  11232418 tctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgagga 11232486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 30590575 - 30590511
Alignment:
Q  37 tgataccatcttagaatttgggttgagcctaactcaaccctacaaaaccaacttgtaagatgagg 101  Q
    ||||||||| |||||||||||| |  |||||| |||||| |||||||||  |||||||| |||||    
T  30590575 tgataccatattagaatttgggctaggcctaagtcaaccttacaaaaccggcttgtaaggtgagg 30590511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 877 - 811
Alignment:
Q  35 tctgataccatcttagaatttgggttgagcctaactcaaccc-tacaaaaccaacttgtaagatgag 100  Q
    ||||||| |||||||||||||| |||  |||||| ||||||| ||||||| || |||||||||||||    
T  877 tctgatatcatcttagaatttgagttaggcctaattcaacccttacaaaatcagcttgtaagatgag 811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 81937 - 81876
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaag 95  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| |||||||| |||||||||    
T  81937 tctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtaag 81876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 2011 - 1943
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| ||||||| |||||| ||||||||  |||||||| ||||||    
T  2011 tctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgagga 1943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 5750 - 5682
Alignment:
Q  35 tctgataccatcttagaatttg-ggttgagcctaactcaaccctacaaaaccaacttgtaagatgagga 102  Q
    |||||||||||||||||| | | ||||| | ||||| |||||| ||||||||  |||||||||||||||    
T  5750 tctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtaagatgagga 5682  T

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