View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_238 (Length: 254)
Name: NF10140A_low_238
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_238 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 746449 - 746201
Alignment:
| Q |
1 |
gaaaaaccggaatatattaatctccacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcattgacaa |
100 |
Q |
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| T |
746449 |
gaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatttaatcattgacaa |
746350 |
T |
|
| Q |
101 |
taattaaaaagagacaatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746349 |
taattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaat |
746250 |
T |
|
| Q |
201 |
gcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746249 |
gcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
746201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 711072 - 710824
Alignment:
| Q |
1 |
gaaaaaccggaatatattaatctccacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcattgacaa |
100 |
Q |
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| T |
711072 |
gaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatataatcattgacaa |
710973 |
T |
|
| Q |
101 |
taattaaaaagagacaatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaat |
200 |
Q |
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| T |
710972 |
taattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaat |
710873 |
T |
|
| Q |
201 |
gcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
249 |
Q |
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| T |
710872 |
gcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
710824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 739337 - 739585
Alignment:
| Q |
1 |
gaaaaaccggaatatattaatctccacatgaacaaccactaaaaaatggatatctagatctataacaataattaaaaattgtaaatttaatcattgacaa |
100 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
739337 |
gaaaaaccggaatatattaatctctacatgaacaaccactaaaaaatggatatttagatctataacaataattaaaaattgtaaatataatcattgacaa |
739436 |
T |
|
| Q |
101 |
taattaaaaagagacaatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaat |
200 |
Q |
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| T |
739437 |
taattaaaaagagataatttagttgttattgtaagagatcaaacatctcttttctaactatagctcaagtaaaaattattgtcttaatctctacatgaat |
739536 |
T |
|
| Q |
201 |
gcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
249 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
739537 |
gcaccactatgatgttaatggttccgtaccacttccaagctaggttttt |
739585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 36573118 - 36573180
Alignment:
| Q |
62 |
ataacaataattaaaaattgtaaatttaatcattgacaataattaaaaagagacaatttagtt |
124 |
Q |
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||||||||||||||||| | |||||| ||||||||||||||| ||| |||||||||||||| |
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| T |
36573118 |
ataacaataattaaaaagagacaatttagtcattgacaataattgaaacgagacaatttagtt |
36573180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 20621375 - 20621327
Alignment:
| Q |
69 |
taattaaaaattgtaaatttaatcattgacaataattaaaaagagacaa |
117 |
Q |
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|||||||| |||| |||| | ||||||||||||||||||||||||||| |
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| T |
20621375 |
taattaaacattgacaattgagtcattgacaataattaaaaagagacaa |
20621327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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