View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_239 (Length: 253)
Name: NF10140A_low_239
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_239 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4124241 - 4124001
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
112 |
Q |
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| T |
4124241 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatg |
4124142 |
T |
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| Q |
113 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
212 |
Q |
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| T |
4124141 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
4124042 |
T |
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| Q |
213 |
aacaatctgggatagtttcacacacccagcagatgcagctg |
253 |
Q |
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| T |
4124041 |
aacaatctgggatagtttcacacaccctgcagatgcagctg |
4124001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4153591 - 4153351
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
4153591 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatg |
4153492 |
T |
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| Q |
113 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
212 |
Q |
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| T |
4153491 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagc |
4153392 |
T |
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| Q |
213 |
aacaatctgggatagtttcacacacccagcagatgcagctg |
253 |
Q |
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| T |
4153391 |
aacaatctgggatagtttcacacaccctgcagatgcagctg |
4153351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 4134783 - 4134546
Alignment:
| Q |
16 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
115 |
Q |
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| T |
4134783 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggta |
4134684 |
T |
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| Q |
116 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
215 |
Q |
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| || || ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||| |
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| T |
4134683 |
tcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4134584 |
T |
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| Q |
216 |
aatctgggatagtttcacacacccagcagatgcagctg |
253 |
Q |
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| T |
4134583 |
aatctgggatagtttcacacaccctgcagattcagctg |
4134546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 4145585 - 4145348
Alignment:
| Q |
16 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
115 |
Q |
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| T |
4145585 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggca |
4145486 |
T |
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| Q |
116 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
215 |
Q |
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| T |
4145485 |
gcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4145386 |
T |
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| Q |
216 |
aatctgggatagtttcacacacccagcagatgcagctg |
253 |
Q |
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| T |
4145385 |
aatctgggatagtttcacacacccttcagattcagctg |
4145348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4163950 - 4163704
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
4163950 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
4163851 |
T |
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| Q |
113 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
206 |
Q |
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|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
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| T |
4163850 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
4163751 |
T |
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| Q |
207 |
tggagcaacaatctgggatagtttcacacacccagcagatgcagctg |
253 |
Q |
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| T |
4163750 |
tagatcaacaatttgggatagtttcactcaccctgcggatgccgctg |
4163704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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