View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_240 (Length: 253)

Name: NF10140A_low_240
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_240
NF10140A_low_240
[»] chr5 (4 HSPs)
chr5 (70-242)||(11336209-11336381)
chr5 (70-175)||(43379448-43379553)
chr5 (11-59)||(11336399-11336449)
chr5 (70-175)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (70-109)||(13208225-13208264)
chr6 (72-130)||(3163534-3163592)
chr6 (187-229)||(10740746-10740788)
chr6 (70-175)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (76-123)||(3466658-3466705)
chr2 (177-242)||(8985740-8985805)
chr2 (70-123)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (95-161)||(3582072-3582138)
[»] chr7 (3 HSPs)
chr7 (70-123)||(35752377-35752430)
chr7 (177-242)||(46964298-46964363)
chr7 (75-123)||(46294693-46294741)
[»] chr4 (1 HSPs)
chr4 (177-242)||(16869676-16869741)
[»] chr3 (1 HSPs)
chr3 (107-175)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 11336381 - 11336209
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  11336381 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaagaaagat 11336282  T
Q  170 gaactcgtatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 242  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11336281 gaactcgtgtatttgtgttgtttacatggtatcaagagcatggtttgattcttcttaaattactcgtcgcttc 11336209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 43379448 - 43379553
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 169  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||  |||| |||||||| |||| | ||||||  ||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 43379547  T
Q  170 gaactc 175  Q
    ||||||    
T  43379548 gaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 11336449 - 11336399
Alignment:
Q  11 cagagagaagagaagaggagacgcacgtgtaggcttttt--tgttcatcta 59  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  11336449 cagagagaagagaagaggagacgcgcgtgtaggcttttttgtgttcatcta 11336399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 43378677 - 43378572
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 169  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | || ||  |||  |||||||| |||| | ||||||  ||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaagat 43378578  T
Q  170 gaactc 175  Q
    ||||||    
T  43378577 gaactc 43378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 13208225 - 13208264
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcac 109  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  13208225 caaaccttttaatcccaacccttgcttttatttttgtcac 13208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 3163592 - 3163534
Alignment:
Q  72 aaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactg 130  Q
    |||||||| ||||||||||||| |||||| |||| ||||||||  ||||||| ||||||    
T  3163592 aaccttttgatcctaacccttggttttatttttgacacatgtcgcacatctataaactg 3163534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 10740746 - 10740788
Alignment:
Q  187 ttgtttacatggtatcaagagcatggtttgattcttcttgaat 229  Q
    ||||| |||||||||||||||||||||||||| || |||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaat 10740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 13207451 - 13207346
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 169  Q
    |||| |||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | |||||  |||  ||||| || |||| | ||||||  ||||||    
T  13207451 caaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagtaaagat 13207352  T
Q  170 gaactc 175  Q
    ||||||    
T  13207351 gaactc 13207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 3466705 - 3466658
Alignment:
Q  76 ttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 123  Q
    |||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  3466705 ttttaatcctaacccttgattttatttttgtcatatgtcacacatcta 3466658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 8985740 - 8985805
Alignment:
Q  177 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 242  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  8985740 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 8985805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 39062863 - 39062916
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 123  Q
    ||||||||||||||||| || ||| ||||||  ||| |||||||||||||||||    
T  39062863 caaaccttttaatcctagccattgattttattgttgccacatgtcatacatcta 39062916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 3582072 - 3582138
Alignment:
Q  95 ttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatgga 161  Q
    |||||| ||| |||||||||||||||||||||| | |||  ||| |||| |||||||||| ||||||    
T  3582072 ttttatttttctcacatgtcatacatctaaaaaatagacatggataaatagaggcttcctaaatgga 3582138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 35752430 - 35752377
Alignment:
Q  70 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 123  Q
    ||||||||||||||  |||| ||| |||||| |||| |||||||||||||||||    
T  35752430 caaaccttttaatcacaaccattgattttatttttgccacatgtcatacatcta 35752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 46964363 - 46964298
Alignment:
Q  177 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 242  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  46964363 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 46964298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 46294741 - 46294693
Alignment:
Q  75 cttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 123  Q
    ||||||||||||||||||| ||||||  |||||| |||||| |||||||    
T  46294741 cttttaatcctaacccttgattttattattgtcatatgtcacacatcta 46294693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 16869676 - 16869741
Alignment:
Q  177 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 242  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  16869676 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 16869741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 40613800 - 40613868
Alignment:
Q  107 cacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagatgaactc 175  Q
    ||||||||| ||||||| ||| || || |||| |||||||||||| || ||||||  ||||||||||||    
T  40613800 cacatgtcagacatctacaaaatgaacagggataaatggaggcttgctaaatggagcaaagatgaactc 40613868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University