View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_243 (Length: 253)
Name: NF10140A_low_243
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_243 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 1831607 - 1831845
Alignment:
| Q |
10 |
agacagaaaaatttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcat |
109 |
Q |
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| T |
1831607 |
agacagaaaaatt-caaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaattcactaaaacttcag |
1831705 |
T |
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| Q |
110 |
agtgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtg-acct |
208 |
Q |
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| T |
1831706 |
aatgtttagtgatgcaccagaagaaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacaccatctgaagtgaatct |
1831805 |
T |
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| Q |
209 |
taggtgtgtaaagaatgaagataaggagctagttgaccct |
248 |
Q |
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| T |
1831806 |
taagcttgtaaagaatgaagatgaagagctagttgaccct |
1831845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 9816931 - 9817073
Alignment:
| Q |
22 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcatagtgtttagtgg |
121 |
Q |
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| T |
9816931 |
ttcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaattcactaaaacctcaaagggattagtga |
9817030 |
T |
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| Q |
122 |
tgcaccagaagaaatatgctacaaatattttaaagagattcaa |
164 |
Q |
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| T |
9817031 |
tgcactagaagaaatatgcaatagatattttgaagagattcaa |
9817073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 15490592 - 15490418
Alignment:
| Q |
22 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcatagtgtttagtgg |
121 |
Q |
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|||| |||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||| | |||||| | | |||||| | |
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| T |
15490592 |
ttcataagacaaatgatgagagaatttgatatggctgatttgggaaagttaatatacttccttgaaatggaattcaattaaactttaaaaggtttaggga |
15490493 |
T |
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| Q |
122 |
tgcaccagaag--aaatatgctacaaatattttaaagagattcaacatgatgggcttcaatcctgcatctacacc |
194 |
Q |
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| T |
15490492 |
tgcatcagaagataaacatgttattgatattcttaagagattcaacatgatgagttgcaatcctacatatacacc |
15490418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 16944223 - 16944109
Alignment:
| Q |
22 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcatagtgtttagtgg |
121 |
Q |
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||||||||||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| || | |||||| |
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| T |
16944223 |
ttcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtga |
16944124 |
T |
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| Q |
122 |
tgcaccagaagaaat |
136 |
Q |
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| T |
16944123 |
tgcaccagaagaaat |
16944109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 17014888 - 17014774
Alignment:
| Q |
22 |
ttcaaaagacaaatgatgagagaatttgagatggaagatttgggaaagttaaaatatttccttgggatggaattcactaaaacttcatagtgtttagtgg |
121 |
Q |
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||||||||||||||||||| |||||| || ||| |||||||||||||| ||| |||||||| || ||||||||| |||| ||| || | |||||| |
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| T |
17014888 |
ttcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaattcactgaaacctcaaagggattagtga |
17014789 |
T |
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| Q |
122 |
tgcaccagaagaaat |
136 |
Q |
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| T |
17014788 |
tgcaccagaagaaat |
17014774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 30065210 - 30065339
Alignment:
| Q |
64 |
ggaaagttaaaatatttccttgggatggaattcactaaaacttcatagtgtttagtggtgcaccagaagaaatatgctacaaatattttaaagagattca |
163 |
Q |
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|||||||||| ||| |||||||| |||||||||||||||||||| | || |||| ||| |||||||| |||||| | ||||| | ||||| |||| |
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| T |
30065210 |
ggaaagttaacatacttccttggtatggaattcactaaaacttctgaaggtctagttaagcatcagaagaagtatgcttctgatattctcaagaggttca |
30065309 |
T |
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| Q |
164 |
acatgatgggcttcaatcctgcatctacac |
193 |
Q |
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| T |
30065310 |
acatgttgaactgcaatcctgcatctacac |
30065339 |
T |
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