View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_246 (Length: 252)
Name: NF10140A_low_246
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_246 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 28529535 - 28529769
Alignment:
| Q |
6 |
cgaagaatatttcaatatgcaaatgccagtactctcctgctacnnnnnnn-gttgtaa--atttactcaccatttcccattcattgtgtgcaggacttta |
102 |
Q |
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| T |
28529535 |
cgaaaaatatttcaatatgaaaatgccagtactctcctgctactttcttttgttgttataatttactcaccatttcccattcattgtgtgcaggacttta |
28529634 |
T |
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| Q |
103 |
attgtattgctatcgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtattttc |
202 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28529635 |
attgtattgctattgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttc |
28529734 |
T |
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| Q |
203 |
tcaatat----ctatgaagcaccgacacatacatg |
233 |
Q |
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||||||| ||||||||||||||||||| |||| |
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| T |
28529735 |
tcaatatctagctatgaagcaccgacacatgcatg |
28529769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 27926778 - 27926707
Alignment:
| Q |
134 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtattttctca |
205 |
Q |
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|||||||||| | ||||||||||| | |||| |||| ||| |||| |||||||||||||||||| ||||||| |
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| T |
27926778 |
aacacttgttgtacttagaagcataactgatattgtgtatctcttgaacattcttctccaggtaatttctca |
27926707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 28056415 - 28056486
Alignment:
| Q |
134 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtattttctca |
205 |
Q |
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|||||| ||| | ||||||||||| | |||| |||| ||| |||| |||||||||||||||||| ||||||| |
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| T |
28056415 |
aacactagttatacttagaagcataactgatgttgtgtatctcttgaacattcttctccaggtaatttctca |
28056486 |
T |
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