View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_247 (Length: 251)
Name: NF10140A_low_247
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_247 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 40688439 - 40688205
Alignment:
| Q |
5 |
agaggcattcataaaggatctaacatattgaatgatgggagcataaggatgaatgtatataggattattccttacactcagattctatcagattggagat |
104 |
Q |
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| T |
40688439 |
agaggcattcataaaggatctaacatattgaatgatgggagcataaggatgagtgtatataggattattccttacactcagattctatcagattggagat |
40688340 |
T |
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| Q |
105 |
agtcttgcagttagattcacaaatggcttccttaaaaccgttactccaatatcccaagtgatcaaaaccaaactatgagcaaaattgcatgtaattccac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
40688339 |
agtcttgcagttagattcacaaatggcttccttaaaaccgttactccaatatcccaagtgatcagaaccaaactatgagcaaaattgcatgtaattcaac |
40688240 |
T |
|
| Q |
205 |
atcgatattataagtatagtcaataacctaatatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40688239 |
atcgatattataagtatagtcaataacctaatatt |
40688205 |
T |
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