View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_25 (Length: 429)
Name: NF10140A_low_25
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Complemental strand, 41168784 - 41168371
Alignment:
| Q |
2 |
cataaggggattaaaacctgatgataaatataagtgtggagtattttgtttagattccaataacctcttggcaatcacctacaaaacagtcaaatatttg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168784 |
cataaggggattaaaacctgatgataaatataagtgtggtgtattttgtttagattccaataacctcttggcaatcacctacaaaacagtcaaatatttg |
41168685 |
T |
|
| Q |
102 |
agatgagtggaaggaagcagagttgaaatatagtccattaattatcaattttcctaagtatttaggtagtagagatgtaaatagaaaggacatgacatcc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168684 |
agatgagtggaaggaagcagagttgaaatatagtccattaattatcaattttcctaagtatttaggtagtagagatgtaaatagaaaggacatgacatcc |
41168585 |
T |
|
| Q |
202 |
ataatcgaacaaaaacattacaaaactgagctctgcatgtacaacaatggccaagtattaccaaaacaatatgctgaatgtactatatagaggcgacaaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168584 |
ataatcgaacaaaaacattacaaaactgagctctgcatgtacaacaatggccaagtattaccaaaacaatatgctgaatgtactatatagaggcgacaaa |
41168485 |
T |
|
| Q |
302 |
tacaattacgatcaatattcggtgtaatnnnnnnnnnnnnttcgtaaggttttttagcattcaactctcaacgatagacaccaaacaatgtcttccctga |
401 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41168484 |
tacaattacgatcaatattcggtgtaataaaaaataaaaatttgtaaggttttttagcattcaactctcaacgatagacaccaaacaatgtcttccctga |
41168385 |
T |
|
| Q |
402 |
gtccctttttaata |
415 |
Q |
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|||||||||||||| |
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| T |
41168384 |
gtccctttttaata |
41168371 |
T |
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