View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_252 (Length: 251)

Name: NF10140A_low_252
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_252
NF10140A_low_252
[»] chr4 (2 HSPs)
chr4 (14-249)||(25109594-25109828)
chr4 (134-248)||(3938201-3938315)
[»] chr5 (3 HSPs)
chr5 (134-248)||(39045195-39045309)
chr5 (134-242)||(7280100-7280208)
chr5 (194-245)||(41701214-41701265)
[»] chr1 (2 HSPs)
chr1 (19-128)||(45516590-45516699)
chr1 (19-128)||(44093782-44093891)
[»] chr3 (3 HSPs)
chr3 (19-128)||(49147877-49147986)
chr3 (134-248)||(3423246-3423360)
chr3 (134-248)||(22163917-22164031)
[»] chr2 (2 HSPs)
chr2 (15-128)||(35296964-35297077)
chr2 (19-128)||(14688491-14688600)
[»] chr8 (3 HSPs)
chr8 (19-126)||(29259107-29259214)
chr8 (19-128)||(13821265-13821374)
chr8 (194-248)||(28574306-28574360)
[»] scaffold0015 (1 HSPs)
scaffold0015 (19-128)||(13900-14009)
[»] chr6 (5 HSPs)
chr6 (19-128)||(16498397-16498506)
chr6 (141-248)||(35164294-35164401)
chr6 (15-73)||(28493627-28493685)
chr6 (15-73)||(29806036-29806094)
chr6 (19-128)||(31932179-31932288)
[»] chr7 (2 HSPs)
chr7 (58-128)||(16768109-16768179)
chr7 (134-248)||(33631415-33631529)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 25109594 - 25109828
Alignment:
Q  14 tatagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaa 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  25109594 tatagacatgaaactgatt-aaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagcaatttccacacaattgaagctaatcgccaa 25109692  T
Q  114 ctttaaaccttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| ||||||    
T  25109693 ctttaaaccttgatagtgctatgaaagtcattctcatttattttttacttctgaatttgctgatgctgtgtggacaggttctgcgagatggatgaatatg 25109792  T
Q  214 agcatcaatactagcaactgacagtctattttgcat 249  Q
    ||||||||||||||||||||||||||||||||||||    
T  25109793 agcatcaatactagcaactgacagtctattttgcat 25109828  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 3938315 - 3938201
Alignment:
Q  134 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 233  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3938315 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3938216  T
Q  234 acagtctattttgca 248  Q
     || |||||||||||    
T  3938215 gcattctattttgca 3938201  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 39045309 - 39045195
Alignment:
Q  134 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 233  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  39045309 atgaaagtcattctcatttattttttacttgtgaatttgttgatgctgtgtggacaggttctatgagatggatgaatatgagcatcaatactagcagctg 39045210  T
Q  234 acagtctattttgca 248  Q
    | |||||||||||||    
T  39045209 agagtctattttgca 39045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 7280100 - 7280208
Alignment:
Q  134 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 233  Q
    |||||| |||||||||  | |||||| ||| ||||| || ||||| |||||||| || | ||||||||||||||||||||||  ||||||||||||||||    
T  7280100 atgaaactcattctcacctgtttttttcttgtgaatatgctgatgttgtgtggaaaggtgctatgagatggataaatatgagtgtcaatactagcaactg 7280199  T
Q  234 acagtctat 242  Q
     || |||||    
T  7280200 gcaatctat 7280208  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 41701265 - 41701214
Alignment:
Q  194 ctatgagatggataaatatgagcatcaatactagcaactgacagtctatttt 245  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| ||||||||    
T  41701265 ctatgagatggatgaacttgagcatcaatactagcaactgacaatctatttt 41701214  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 45516590 - 45516699
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||||||||| |||||||| | |||||| ||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||| |||    
T  45516590 acatgaaaatgatttaaatcatctttgatgaagttgactgcaagaagggaatctgaatagcacgccaattcctcacaattgaagctgatcgccaacctta 45516689  T
Q  119 aaccttgata 128  Q
    | ||||||||    
T  45516690 acccttgata 45516699  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 44093891 - 44093782
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||||||||| |||||||| |||||||| |||||||| || ||||  ||||| |||||||||| |||||| ||||| | ||||||| |||    
T  44093891 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagtgagtctgaatagcacgccaattcctaacaatttaagctgaccgccaacctta 44093792  T
Q  119 aaccttgata 128  Q
    | ||||||||    
T  44093791 acccttgata 44093782  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 49147877 - 49147986
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| |||||| |||||||||| ||||| ||||||||| |||    
T  49147877 acatggaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaatacctcacaatttaagctgatcgccaacctta 49147976  T
Q  119 aaccttgata 128  Q
    | ||||||||    
T  49147977 acccttgata 49147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 3423360 - 3423246
Alignment:
Q  134 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 233  Q
    |||||| |||||||||  | |||||| ||| ||| | |||||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  3423360 atgaaactcattctcacctctttttttcttgtgattatgttgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 3423261  T
Q  234 acagtctattttgca 248  Q
     || |||||||||||    
T  3423260 gcattctattttgca 3423246  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 22163917 - 22164031
Alignment:
Q  134 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 233  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  22163917 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 22164016  T
Q  234 acagtctattttgca 248  Q
     || |||||||||||    
T  22164017 gcattctattttgca 22164031  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 35297077 - 35296964
Alignment:
Q  15 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaac 114  Q
    |||||||||||| ||||||||||| || ||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | |||||||    
T  35297077 atagacatgaaaatgatttaaatcatcattgatcaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaac 35296978  T
Q  115 tttaaaccttgata 128  Q
     |||| ||||||||    
T  35296977 cttaacccttgata 35296964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 14688600 - 14688491
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||||||||| |||||||| |||||||  ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  14688600 acatgaaaatgatttaaatcatctttgatgaggttgattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 14688501  T
Q  119 aaccttgata 128  Q
    | | ||||||    
T  14688500 acctttgata 14688491  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 29259214 - 29259107
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  29259214 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 29259115  T
Q  119 aaccttga 126  Q
    | ||||||    
T  29259114 acccttga 29259107  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 13821374 - 13821265
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| | ||||||||||||||| ||| | ||||||||| |||    
T  13821374 acatgaaaatgatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgtcaattcctcacaatttaagttgatcgccaacctta 13821275  T
Q  119 aaccttgata 128  Q
    | | ||||||    
T  13821274 accattgata 13821265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 28574360 - 28574306
Alignment:
Q  194 ctatgagatggataaatatgagcatcaatactagcaactgacagtctattttgca 248  Q
    ||||||||||||| ||||||||  ||||||||||||| || || |||||||||||    
T  28574360 ctatgagatggatgaatatgagtgtcaatactagcaattggcaatctattttgca 28574306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 14009 - 13900
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| | ||||||||| |||||||| |||||||| ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||    
T  14009 acatgaaaataatttaaatcatctttgatgaggttgactgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaacctta 13910  T
Q  119 aaccttgata 128  Q
    | ||||||||    
T  13909 acccttgata 13900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 16498397 - 16498506
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||||||||| |||||||| ||||| |  ||||||||||| ||||  ||||| ||||||||||||||||| ||| ||| ||||||| |||    
T  16498397 acatgaaaatgatttaaatcatctttgatgaggttcattgcaagaagggagtctgaatagcacgccaattcctcacaatttaagttaaccgccaacctta 16498496  T
Q  119 aaccttgata 128  Q
    | ||||||||    
T  16498497 acccttgata 16498506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 35164401 - 35164294
Alignment:
Q  141 tcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactgacagtct 240  Q
    |||||||||| |||||||||||| ||||| |||||||| ||||||||||| | |||| |  ||||| ||||| ||| |||||| |||||| || ||||||    
T  35164401 tcattctcatctattttttacttgtgaatatgttgatgttgtgtggacaggtgctataaattggatgaatataagcgtcaatattagcaattggcagtct 35164302  T
Q  241 attttgca 248  Q
    ||| ||||    
T  35164301 attctgca 35164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 28493685 - 28493627
Alignment:
Q  15 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 73  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  28493685 atagacatgaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 28493627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 29806094 - 29806036
Alignment:
Q  15 atagacatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctg 73  Q
    |||||||||||| ||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  29806094 atagacatgaaaatgatttaaatcatctttgatgaggttgacaacaagaagagaatctg 29806036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 31932179 - 31932288
Alignment:
Q  19 acatgaaactgatttaaatcttctttgataaggttgacagcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaacttta 118  Q
    |||||||| ||||| ||||| || ||||| || |||||||  ||||||||||| |  |||||| ||||||| ||| ||||||| ||||| |||| |||||    
T  31932179 acatgaaagtgattcaaatcctccttgatgagtttgacagtgagaagggaatccgaatagcaaaccaattcgtcaaaattgaaactaatagccagcttta 31932278  T
Q  119 aaccttgata 128  Q
     || ||||||    
T  31932279 gactttgata 31932288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 16768109 - 16768179
Alignment:
Q  58 gcaagaagggaatctgtgtagcaagccaattcctcacaattgaagctaatcgccaactttaaaccttgata 128  Q
    ||||||||||| ||||  ||||| ||||||||||||||||| ||| | | ||||||| |||| ||||||||    
T  16768109 gcaagaagggagtctgaatagcacgccaattcctcacaatttaagttgaccgccaaccttaacccttgata 16768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 33631529 - 33631415
Alignment:
Q  134 atgaaagtcattctcatttattttttacttctgaatttgttgatgctgtgtggacagattctatgagatggataaatatgagcatcaatactagcaactg 233  Q
    |||||| |||||||||  | |||||| ||| ||| | || ||||||||| |||| || |  |||||||||||| |||||||   ||||||||||||| ||    
T  33631529 atgaaactcattctcacctctttttttcttgtgattatgctgatgctgtttggaaaggtgttatgagatggatgaatatgacggtcaatactagcaattg 33631430  T
Q  234 acagtctattttgca 248  Q
     || |||||||||||    
T  33631429 gcattctattttgca 33631415  T

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