View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_253 (Length: 250)
Name: NF10140A_low_253
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_253 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32534438 - 32534676
Alignment:
| Q |
1 |
agtattttataatgactaatgctgacttgagaaacaatgatgtctttagtagtataatttagaatttgtatttttattttagcattatattaagtttgca |
100 |
Q |
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| T |
32534438 |
agtattatataatgactaatgctgacttaagaaacaatgatgtctttagtagtataatttagaatttgtatttttatgttagcattatattaagtttgca |
32534537 |
T |
|
| Q |
101 |
cgttgtatcttagcccatcatgtcttgtagaatctacaattggtcatcacatgtcaatgagctcttgttattctagacatgtcctgcacatgcttcctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
32534538 |
cgttgtatcttagcccatcatgtcttgtagaatctacaattggtcatcacatgtcaatgacctcttgttattctatacatgtcctacacatgcttcctag |
32534637 |
T |
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| Q |
201 |
cttgatacaatttgtcaccaaaactcagttcgcattcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32534638 |
cttgatacaatttgtcaccaaaactcagttcgcattcat |
32534676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 32549959 - 32549995
Alignment:
| Q |
194 |
ttcctagcttgatacaatttgtcaccaaaactcagtt |
230 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
32549959 |
ttcctagcttgatacaatttgtctccaaaactcagtt |
32549995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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