View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_258 (Length: 250)
Name: NF10140A_low_258
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_258 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 37427911 - 37427683
Alignment:
| Q |
9 |
atcacgtagcaaaaattgtccatttcaaaggacaagagctaggactttttgctatatacgatggacacctgggagacagtgtaccgtcatatttgcaaaa |
108 |
Q |
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| T |
37427911 |
atcacgtagcaaaaattgtccatttcaaaggacaagagctaggactttttgctatatacgatggacacctgggagacagtgtaccgtcatatttgcaaaa |
37427812 |
T |
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| Q |
109 |
gcatctcttttctaatatcttgaaggaagtgagttgttgaatcaaactaaagatattatgtattggttattgcctcacatttgatttcttcggaaaaggg |
208 |
Q |
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| T |
37427811 |
gcatctcttttctaatatcttgaaggaagtgagttgttgaaacaaactaaagatattatgtattggttattgcctcacatttgatttcttcggaaaaggg |
37427712 |
T |
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| Q |
209 |
cttttcttcctttctattttatgttgtct |
237 |
Q |
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| T |
37427711 |
cttttcttcctttctattttatgttgtct |
37427683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 1664573 - 1664706
Alignment:
| Q |
10 |
tcacgtagcaaaaattgtccatttcaaaggacaagagctaggactttttgctatatacgatggacacctgggagacagtgtaccgtcatatttgcaaaag |
109 |
Q |
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|||||| || ||||| ||||| ||||| || | |||| | |||||||||||||||| ||||||||| ||| |||| ||| || | ||||| ||||| |
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| T |
1664573 |
tcacgttgcgaaaatcgtccagttcaacgggcgagagttgggactttttgctatatttgatggacactcgggtgacactgtgcctgcctatttacaaaaa |
1664672 |
T |
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| Q |
110 |
catctcttttctaatatcttgaaggaagtgagtt |
143 |
Q |
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| T |
1664673 |
catctcttttctaatatcttgaaggaagtgagtt |
1664706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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