View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_259 (Length: 250)

Name: NF10140A_low_259
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_259
NF10140A_low_259
[»] chr1 (20 HSPs)
chr1 (20-223)||(52838499-52838705)
chr1 (92-204)||(8314737-8314845)
chr1 (90-236)||(14500946-14501092)
chr1 (90-236)||(32519879-32520025)
chr1 (90-236)||(18414342-18414488)
chr1 (90-236)||(24779667-24779813)
chr1 (103-209)||(15853220-15853326)
chr1 (98-210)||(1345416-1345528)
chr1 (90-236)||(49007978-49008124)
chr1 (90-226)||(45541282-45541418)
chr1 (90-208)||(2027661-2027779)
chr1 (90-198)||(1609288-1609393)
chr1 (79-227)||(12437600-12437747)
chr1 (121-209)||(32830031-32830119)
chr1 (143-198)||(5965237-5965292)
chr1 (110-236)||(41401267-41401393)
chr1 (111-236)||(8110499-8110624)
chr1 (90-179)||(2843820-2843909)
chr1 (90-179)||(38981183-38981272)
chr1 (149-197)||(9089955-9090003)
[»] chr8 (13 HSPs)
chr8 (79-238)||(15683496-15683656)
chr8 (90-236)||(18381485-18381631)
chr8 (90-210)||(11958739-11958859)
chr8 (96-227)||(1805548-1805679)
chr8 (90-236)||(6420715-6420861)
chr8 (91-210)||(3941577-3941695)
chr8 (90-198)||(8776964-8777071)
chr8 (99-164)||(27766578-27766643)
chr8 (149-209)||(17648688-17648747)
chr8 (90-129)||(12498841-12498880)
chr8 (90-220)||(31441618-31441751)
chr8 (90-133)||(36017370-36017413)
chr8 (90-182)||(3730544-3730635)
[»] chr7 (13 HSPs)
chr7 (98-224)||(5287551-5287675)
chr7 (96-236)||(6616837-6616977)
chr7 (90-236)||(34638620-34638766)
chr7 (90-236)||(42053433-42053579)
chr7 (90-216)||(37573327-37573453)
chr7 (151-227)||(24648444-24648520)
chr7 (94-236)||(13562104-13562246)
chr7 (90-225)||(21949875-21950010)
chr7 (103-182)||(7792831-7792910)
chr7 (90-212)||(9175012-9175134)
chr7 (96-208)||(21292409-21292521)
chr7 (99-131)||(33440227-33440259)
chr7 (187-224)||(24651379-24651416)
[»] scaffold0204 (1 HSPs)
scaffold0204 (96-215)||(13753-13868)
[»] chr3 (15 HSPs)
chr3 (90-236)||(4062516-4062662)
chr3 (90-236)||(28414194-28414340)
chr3 (90-236)||(37968983-37969129)
chr3 (92-227)||(25899251-25899389)
chr3 (90-236)||(3336090-3336236)
chr3 (90-236)||(33951810-33951956)
chr3 (97-209)||(46028385-46028497)
chr3 (90-226)||(22402223-22402359)
chr3 (106-209)||(637237-637340)
chr3 (90-157)||(28311655-28311722)
chr3 (90-236)||(47330172-47330318)
chr3 (90-210)||(587164-587283)
chr3 (107-227)||(25911734-25911854)
chr3 (90-129)||(4545815-4545854)
chr3 (96-177)||(24094891-24094972)
[»] scaffold0014 (1 HSPs)
scaffold0014 (90-184)||(20226-20320)
[»] chr5 (12 HSPs)
chr5 (91-236)||(39561037-39561182)
chr5 (90-236)||(16484753-16484899)
chr5 (105-216)||(16044565-16044676)
chr5 (90-197)||(29731028-29731135)
chr5 (90-236)||(16482304-16482450)
chr5 (90-236)||(39004689-39004835)
chr5 (90-208)||(40834876-40834994)
chr5 (104-194)||(17110308-17110398)
chr5 (95-210)||(6764147-6764259)
chr5 (90-236)||(22494585-22494731)
chr5 (167-236)||(8714290-8714358)
chr5 (95-132)||(43398133-43398170)
[»] scaffold0009 (1 HSPs)
scaffold0009 (90-236)||(194782-194928)
[»] chr4 (14 HSPs)
chr4 (99-205)||(18376108-18376214)
chr4 (99-227)||(23493182-23493310)
chr4 (90-209)||(27020389-27020508)
chr4 (90-236)||(5947994-5948140)
chr4 (97-198)||(34851445-34851546)
chr4 (92-216)||(37010451-37010574)
chr4 (97-200)||(1206619-1206722)
chr4 (90-236)||(39295737-39295874)
chr4 (110-216)||(29688781-29688887)
chr4 (90-215)||(19327114-19327239)
chr4 (90-198)||(33287575-33287683)
chr4 (103-236)||(36316352-36316485)
chr4 (103-236)||(36330561-36330694)
chr4 (85-129)||(19585867-19585911)
[»] chr6 (10 HSPs)
chr6 (90-236)||(18899025-18899171)
chr6 (90-209)||(9513289-9513408)
chr6 (97-209)||(720355-720466)
chr6 (90-206)||(15559503-15559619)
chr6 (90-236)||(1122326-1122473)
chr6 (90-198)||(5474189-5474297)
chr6 (87-210)||(24316692-24316814)
chr6 (90-198)||(11121501-11121609)
chr6 (139-209)||(22514402-22514472)
chr6 (139-236)||(19430168-19430265)
[»] chr2 (8 HSPs)
chr2 (96-227)||(12528287-12528418)
chr2 (90-236)||(40267620-40267766)
chr2 (103-198)||(30750672-30750764)
chr2 (98-200)||(27544919-27545020)
chr2 (79-133)||(3552366-3552420)
chr2 (96-225)||(4159842-4159971)
chr2 (90-179)||(4648072-4648161)
chr2 (90-198)||(9893973-9894080)
[»] scaffold0088 (3 HSPs)
scaffold0088 (96-236)||(1817-1957)
scaffold0088 (99-236)||(25696-25833)
scaffold0088 (96-236)||(9201-9341)
[»] scaffold0256 (1 HSPs)
scaffold0256 (90-236)||(4166-4312)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 52838499 - 52838705
Alignment:
Q  20 tgtgggttcat-ggattgtattggataggtgtttgttttgggtttgtcgtatcccaagta-ccttatgttttacatgggactgtgtggactcgaaagagt 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||| |||||||| ||||| |||| ||||||||    
T  52838499 tgtgggttcattggattgtattggataggtgtttgttttgggtttgtcgtatcccgattatccttttgtttgacatgggaatgtgtagacttgaaagagt 52838598  T
Q  118 cgttaatgcttgctgcgatttttgcagggaa-ttgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattatagacccgcttggta 216  Q
    |||||||||||| |||| |||||||| ||   ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  52838599 cgttaatgcttgttgcggtttttgcaaggtggttgatggtacgtgatccgatttcgtgttgacgatcgcatcattcgccaaagtatagacctgcttggta 52838698  T
Q  217 ctcacaa 223  Q
    |||||||    
T  52838699 ctcacaa 52838705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 8314845 - 8314737
Alignment:
Q  92 atgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcatt 191  Q
    |||||||||||||||||||||||||||||||||||||| |||    |||||||||| ||||||||| ||||||||| ||||||||||||||||  |||||    
T  8314845 atgggactgtgtggactcgaaagagtcgttaatgcttgttgc----tttgcagggagttgatggtacgtgatccgaattcgtgttgacgatcgtttcatt 8314750  T
Q  192 cgccaaattatag 204  Q
     ||||||||||||    
T  8314749 tgccaaattatag 8314737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 14500946 - 14501092
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||| |||||||| |||||||||||||||||||||  |    || ||| ||||| ||||| ||| |||||| |||||||||||||||||||  |||    
T  14500946 acatgggattgtgtggattcgaaagagtcgttaatgcttcttttcgttgttgtagggagttgattgtacgtgatctgatttcgtgttgacgatcgattca 14501045  T
Q  190 ttcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||| ||||||| | ||||||||||| |||||||||||||| ||||    
T  14501046 ttcgctaaattatcgtcccgcttggtattcacaaacgtttatcgtta 14501092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 32519879 - 32520025
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  32519879 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 32519977  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||| ||||    
T  32519978 attcgccaaattatagacccgattggccctcacaaacgtctatcgtta 32520025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 18414488 - 18414342
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  18414488 acatgagactgtgtgaacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 18414390  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||| ||||    
T  18414389 attcgccaaattatagacccgattggccctcacaaacgtctatcgtta 18414342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 24779813 - 24779667
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||| ||||||||||| |||  || ||||||||| ||||||  | ||||||||||||  |||||| ||||| |||     
T  24779813 acatgagactgtgtggacttgaaagagtagttaatgcttgttgccgttattgcagggagttgatgacacgtgatccgattttatgttgaagatcg-atca 24779715  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  24779714 attcgccaaattatagacccgctttgccctcacaaacgtctatagtta 24779667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 15853326 - 15853220
Alignment:
Q  103 tggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattat 202  Q
    ||||||||||||| |||| |||||||| ||   || ||||||||| ||||||||| ||||||| ||||||||||||||||||  |||||||||||||| |    
T  15853326 tggactcgaaagattcgtcaatgcttgttgtctttattgcagggagttgatggtacgtgatccaatttcgtgttgacgatcggttcattcgccaaatttt 15853227  T
Q  203 agacccg 209  Q
    |||||||    
T  15853226 agacccg 15853220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 1345528 - 1345416
Alignment:
Q  98 ctgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaa 197  Q
    |||| ||||||||||||||||||||||||||| ||   || ||| |  || ||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  1345528 ctgtatggactcgaaagagtcgttaatgcttgatgtcgttgttgtaaagagttgatggtacgtgatccgatttcgtgttgacgatcgattcattcgccaa 1345429  T
Q  198 attatagacccgc 210  Q
    | | |||||||||    
T  1345428 agtttagacccgc 1345416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 49008124 - 49007978
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||| ||| ||||||| | |||||||||||| ||| ||| ||||| |||     
T  49008124 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcaaggagttgatggcacgtgatccgattttgtgatgaagatcg-atca 49008026  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||||| ||| |  ||||||||||| ||| ||||    
T  49008025 attcgccaaattatagacccactttgccctcacaaacgtctatcgtta 49007978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 45541418 - 45541282
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||  || ||||||||| ||||||| | |||||| ||||| ||| ||| ||||| |||     
T  45541418 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatctgattttgtgatgaagatcg-atca 45541320  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacg 226  Q
    |||| |||||||||||| |||||| |  ||||||||||    
T  45541319 attcaccaaattatagatccgctttgccctcacaaacg 45541282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 2027779 - 2027661
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| || |||||||||| |||||||||||||||||||| |||  || ||||||||| ||||||| |  ||||||||||| ||| ||| ||||| |||     
T  2027779 acatgagagtgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacatgatccgattttgtgatgaagatcg-atca 2027681  T
Q  189 attcgccaaattatagaccc 208  Q
    ||||||||||||||||||||    
T  2027680 attcgccaaattatagaccc 2027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 1609288 - 1609393
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||||||| || ||||||||||||||| ||||||||||||     ||| ||||| ||||||| | ||||||||||||| ||||||||||||  |||    
T  1609288 acatgggactgtatgaactcgaaagagtcgtcaatgcttgctgc---cgttgtagggagttgatggcacgtgatccgatttcttgttgacgatcgattca 1609384  T
Q  190 ttcgccaaa 198  Q
    |||||||||    
T  1609385 ttcgccaaa 1609393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 12437600 - 12437747
Alignment:
Q  79 ccttatgttttacatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttga 178  Q
    |||| ||||| ||||| |||||| |||||| |||||||||||||||  ||| ||   || ||||||||| ||||||||| | ||| ||||||| || | |    
T  12437600 ccttttgtttgacatgagactgtatggacttgaaagagtcgttaatttttgatgtcgttgttgcagggagttgatggtacgcgattcgatttcatgctaa 12437699  T
Q  179 cgatcgcatcattcgccaaattatagacccgcttggtactcacaaacgt 227  Q
    ||| ||  |||||||||| | |||||||||| |||||||||||||||||    
T  12437700 cgaccgagtcattcgccaga-tatagacccgtttggtactcacaaacgt 12437747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 32830031 - 32830119
Alignment:
Q  121 taatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattatagacccg 209  Q
    ||||||||||||   || ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| |||| | ||||||||    
T  32830031 taatgcttgctgtctttgttgcagggagttgatggtacgtgatccgatttcgtgttgacgatcggttcattcgtcaaactttagacccg 32830119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 5965237 - 5965292
Alignment:
Q  143 agggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaa 198  Q
    ||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  5965237 agggagttgatggtacgtgatccgatttcgtgttgacgatcggttcattcgccaaa 5965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 41401267 - 41401393
Alignment:
Q  110 gaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgccaaattatagaccc 208  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||||| | | |||||||||||| |||||   ||||| ||| |||| |||||||||||||||    
T  41401267 gaaagagtcgttaatgcttgttgccattgttgcagggagttgatagcacgtgatccgattttgtgttatagatcg-atcaattcaccaaattatagaccc 41401365  T
Q  209 gcttggtactcacaaacgtttattgtta 236  Q
    | || |  ||||||||||| ||| ||||    
T  41401366 gatttgccctcacaaacgtctatcgtta 41401393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 8110624 - 8110499
Alignment:
Q  111 aaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgccaaattatagacccg 209  Q
    ||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| ||| ||| |||||||||||||||||    
T  8110624 aaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atcaatttgccaaattatagacccg 8110526  T
Q  210 cttggtactcacaaacgtttattgtta 236  Q
     || |  ||||||||||| ||| ||||    
T  8110525 atttgccctcacaaacgtctatcgtta 8110499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 2843909 - 2843820
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgac 179  Q
    ||||| |||||| |||||| ||||||||| ||| |||||| |||  || ||||| ||| ||||||| | |||||||||||| | ||||||    
T  2843909 acatgagactgtatggacttgaaagagtcattattgcttgttgccgttgttgcatggagttgatggcacgtgatccgattttgcgttgac 2843820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 38981183 - 38981272
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgac 179  Q
    ||||| |||||| |||||| ||||||||| |||||||||| |||  || ||||| ||  ||||||| | |||||||||||| | ||||||    
T  38981183 acatgagactgtatggacttgaaagagtcattaatgcttgttgccgttgttgcatggggttgatggcacgtgatccgattttgcgttgac 38981272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 9089955 - 9090003
Alignment:
Q  149 ttgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaa 197  Q
    ||||||||| ||||||||||||| ||||||||||||  |||||| ||||    
T  9089955 ttgatggtacgtgatccgatttcatgttgacgatcgtttcattcaccaa 9090003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 15683656 - 15683496
Alignment:
Q  79 ccttatgttttacatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgattttt-gcagggaattgatggtatgtgatccgatttcgtgttg 177  Q
    |||||||||| || |||||||||||| |||||||| |||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  15683656 ccttatgtttgacttgggactgtgtgaactcgaaacagtcattaatgcttgctgcgattttttgcatggagttgatggtatgtgatccgatttcgtgttg 15683557  T
Q  178 acgatcgcatcattcgccaaattatagacccgcttggtactcacaaacgtttattgttatg 238  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15683556 acgatcgcatcattcgccaaattatagaccctcttggtactcacaaacgtttattgttatg 15683496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 18381485 - 18381631
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  18381485 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 18381583  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||| ||||    
T  18381584 attcgccaaattatagacccgattggccctcacaaacgtctatcgtta 18381631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 11958739 - 11958859
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||| ||||||||||||||||||||||||||||||||||| |||  || ||||||||| |||||||||  |||| |||||| ||||||| ||||   |||    
T  11958739 acattggactgtgtggactcgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggtacatgattcgatttagtgttgatgatctattca 11958838  T
Q  190 ttcgccaaattatagacccgc 210  Q
    ||| ||||| | |||||||||    
T  11958839 ttcaccaaactttagacccgc 11958859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 1805548 - 1805679
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcc 195  Q
    |||||||||||||||||||||||||||||| ||| ||   || ||||| ||| || |||| | ||||||  ||||| ||||||||||||  ||||| |||    
T  1805548 gactgtgtggactcgaaagagtcgttaatgtttgatgtcgttgttgcatggagttaatggcacgtgatctaatttcatgttgacgatcgattcatttgcc 1805647  T
Q  196 aaattatagacccgcttggtactcacaaacgt 227  Q
    ||| |||||||||| |||||||| ||||||||    
T  1805648 aaaatatagacccgattggtacttacaaacgt 1805679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 6420861 - 6420715
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||| ||||| ||||| | | |||||| ||||| ||||||| ||||| |||     
T  6420861 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgtagggagttgatagcacgtgatctgattttgtgttgaagatcg-atca 6420763  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||   |||||||||| ||| ||||    
T  6420762 attcgccaaattatagacccgattggccatcacaaacgtctatcgtta 6420715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 3941695 - 3941577
Alignment:
Q  91 catgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcat 190  Q
    |||| |||||| |||||||||||||||||| |||||||||||   || ||||||| | |||||| ||  ||||||||||| |||||||||||||  ||||    
T  3941695 catgagactgtatggactcgaaagagtcgtcaatgcttgctgtcgttgttgcaggaagttgatgatacatgatccgattt-gtgttgacgatcgattcat 3941597  T
Q  191 tcgccaaattatagacccgc 210  Q
    |||||||  | |||||||||    
T  3941596 tcgccaagctttagacccgc 3941577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 8777071 - 8776964
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||| ||||||| ||| |||||||||||| | |||||||| ||   || ||||||||  ||||||||| ||||||||| ||| ||||||||||||  |||    
T  8777071 acataggactgtatgggctcgaaagagtcatcaatgcttgatgtcgttgttgcagggggttgatggtacgtgatccga-ttcatgttgacgatcgattca 8776973  T
Q  190 ttcgccaaa 198  Q
    |||||||||    
T  8776972 ttcgccaaa 8776964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 27766643 - 27766578
Alignment:
Q  99 tgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatc 164  Q
    |||||| |||||||||||||||| ||| ||| |||  || ||||||||| ||||||||||||||||    
T  27766643 tgtgtgaactcgaaagagtcgttgatgtttgatgccgttgttgcagggagttgatggtatgtgatc 27766578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 17648747 - 17648688
Alignment:
Q  149 ttgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattatagacccg 209  Q
    ||||||||||||||||| |||| |||||||||||||  |||||||||||| | ||||||||    
T  17648747 ttgatggtatgtgatccaattt-gtgttgacgatcggttcattcgccaaactttagacccg 17648688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 12498841 - 12498880
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttg 129  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  12498841 acatgagactgtgtggacttgaaagagtcgttaatgcttg 12498880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 31441751 - 31441618
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcg---ca 186  Q
    ||||||||  ||||||||||||||||||| |||| ||||| ||   || ||||||  | ||||||||| ||||| |||||||| ||||| | |||   ||    
T  31441751 acatgggatggtgtggactcgaaagagtcattaacgcttgttgttgttgttgcagaaatttgatggtacgtgattcgatttcgcgttgaaggtcgattca 31441652  T
Q  187 tcattcgccaaattatagacccgcttggtactca 220  Q
      |||||||||| ||||||| || ||||||||||    
T  31441651 atattcgccaaaatatagactcgattggtactca 31441618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 36017413 - 36017370
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgc 133  Q
    |||| |||| |||||| |||||||||||||||||||||||||||    
T  36017413 acataggacagtgtgggctcgaaagagtcgttaatgcttgctgc 36017370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 3730544 - 3730635
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgat 182  Q
    |||||||||| | ||||||  |||||||||||||| | || || | || ||||||||| ||||||||| | ||||||| |||||||| |||||    
T  3730544 acatgggactatatggactaaaaagagtcgttaattcgtgttgtggttgttgcagggagttgatggtacgcgatccga-ttcgtgttaacgat 3730635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 5287675 - 5287551
Alignment:
Q  98 ctgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaa 197  Q
    |||||||||||||||||||||||||||||||| ||   | || ||||||| |||||| || |||||| |||||||||||||||||||  |||||||||||    
T  5287675 ctgtgtggactcgaaagagtcgttaatgcttgatgt--tgttggcagggagttgatgatacgtgatctgatttcgtgttgacgatcgattcattcgccaa 5287578  T
Q  198 attatagacccgcttggtactcacaaa 224  Q
    | |||||||||||||||||||||||||    
T  5287577 aatatagacccgcttggtactcacaaa 5287551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 6616977 - 6616837
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgc 194  Q
    |||||||||||||  ||||||||||||||||||| |||  || ||||||||| ||||||| | |||||||||||| ||||||| ||||| ||| ||||||    
T  6616977 gactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg-atcaattcgc 6616879  T
Q  195 caaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||| |  ||||||||||| ||| ||||    
T  6616878 caaattatagacccgctttgccctcacaaacgtctatcgtta 6616837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 34638620 - 34638766
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  34638620 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 34638718  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||   |||||||||| ||| ||||    
T  34638719 attcgccaaattatagacccgattggccatcacaaacgtctatcgtta 34638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 42053579 - 42053433
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  42053579 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 42053481  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||   |||||||||| ||| ||||    
T  42053480 attcgccaaattatagacccgattggccatcacaaacgtctatcgtta 42053433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 37573453 - 37573327
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||||| ||||||||||||||||||||||||||||| ||  ||| || |||| | ||||||||  ||||  ||| |||||||||| |||||  |||    
T  37573453 acatgggactatgtggactcgaaagagtcgttaatgcttgttgtcattgtttcaggaagttgatggttcgtgagtcgacttcgtgttgaggatcgattca 37573354  T
Q  190 ttcgccaaattatagacccgcttggta 216  Q
    ||||||||| | |||||||||||||||    
T  37573353 ttcgccaaactttagacccgcttggta 37573327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 24648444 - 24648520
Alignment:
Q  151 gatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattatagacccgcttggtactcacaaacgt 227  Q
    ||||||| ||||||||||||||||||||||| ||  | |||||||||||||||||||| ||||||||||||||||||    
T  24648444 gatggtacgtgatccgatttcgtgttgacgaacgatttattcgccaaattatagacccacttggtactcacaaacgt 24648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 13562104 - 13562246
Alignment:
Q  94 gggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcg 193  Q
    |||||||||| |||||||||||||| ||||||  || |    || ||||||||| |||||||||  |||||| |||||  |||||||||||  |||||||    
T  13562104 gggactgtgtagactcgaaagagtcattaatgtgtgttctcgttgttgcagggagttgatggtacatgatccaatttcaagttgacgatcgattcattcg 13562203  T
Q  194 ccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
     |||||||| |||||| ||||||||||||||| | ||||||||    
T  13562204 tcaaattatcgacccgtttggtactcacaaacatctattgtta 13562246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 21949875 - 21950010
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||||| |||||| |||||||||||||||||||| ||   || ||||| ||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  21949875 acatgagactgtatggacttgaaagagtcgttaatgcttgttgttgttgttgcatggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 21949973  T
Q  189 attcgccaaattatagacccgcttggtactcacaaac 225  Q
    |||||||||||||| || |||||| |  |||||||||    
T  21949974 attcgccaaattatggatccgctttgccctcacaaac 21950010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 7792910 - 7792831
Alignment:
Q  103 tggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgat 182  Q
    |||||||||||||||||| |||||||| |   ||| |||||| || ||||||||| ||||||||||| ||||||||||||    
T  7792910 tggactcgaaagagtcgtgaatgcttgatttcattgttgcagagagttgatggtacgtgatccgattgcgtgttgacgat 7792831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 9175012 - 9175134
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||| |||||||| |||| ||| ||||||||||| ||   || ||||| ||| ||||||| | |||||||||||| | ||||| ||||| |||     
T  9175012 acatgagactatgtggacttgaaatagttgttaatgcttgttgtcgttgttgcatggagttgatggcacgtgatccgattttgcgttgaagatcg-atca 9175110  T
Q  189 attcgccaaattatagacccgctt 212  Q
    ||||||||||||||||||||||||    
T  9175111 attcgccaaattatagacccgctt 9175134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 21292409 - 21292521
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcc 195  Q
    |||||| ||||||||||||| ||||||||||||| ||   || ||||||| | ||||| ||  ||||||||||||| | ||||||||||  ||||||| |    
T  21292409 gactgtatggactcgaaagaatcgttaatgcttgttgtcgttgttgcaggaagttgatagtgcgtgatccgatttcattttgacgatcgattcattcgtc 21292508  T
Q  196 aaattatagaccc 208  Q
    ||| | |||||||    
T  21292509 aaactttagaccc 21292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 33440227 - 33440259
Alignment:
Q  99 tgtgtggactcgaaagagtcgttaatgcttgct 131  Q
    |||||||||||||||||||||||||||||||||    
T  33440227 tgtgtggactcgaaagagtcgttaatgcttgct 33440259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 24651416 - 24651379
Alignment:
Q  187 tcattcgccaaattatagacccgcttggtactcacaaa 224  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  24651416 tcattcgccaaattatagacctgtttggtactcacaaa 24651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 13753 - 13868
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcc 195  Q
    ||||||||| ||||||||||||||||||||||||||||    |||||||||| ||||||||| ||||||||| |||||||||||||| |  |||||||||    
T  13753 gactgtgtgtactcgaaagagtcgttaatgcttgctgc----tttgcagggagttgatggtacgtgatccgaattcgtgttgacgattgtttcattcgcc 13848  T
Q  196 aaattatagacccgcttggt 215  Q
    ||||||||| |||| |||||    
T  13849 aaattataggcccgattggt 13868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 4062516 - 4062662
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||||||||||||  ||||||||||||||||||| |||  || ||||||||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  4062516 acatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 4062614  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  4062615 attcgccaaattatagacccgctttgccctcacaaacgtctatcgtta 4062662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 28414194 - 28414340
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||||||||||||  ||||||||||||||||||| |||  || ||||||||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  28414194 acatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 28414292  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  28414293 attcgccaaattatagacccgctttgccctcacaaacgtctatcgtta 28414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 37969129 - 37968983
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||||||||||||  ||||||||||||||||||| |||  || ||||||||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  37969129 acatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 37969031  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  37969030 attcgccaaattatagacccgctttgccctcacaaacgtctatcgtta 37968983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 25899251 - 25899389
Alignment:
Q  92 atgggactgtgtggactcgaaagagtcgttaatgcttgct----gcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcat 187  Q
    |||||||||||| |||||||||||||||||||| |||| |    |   || ||||||||| |||||| ||||||||||||||||||||| ||||| |  |    
T  25899251 atgggactgtgtcgactcgaaagagtcgttaatacttgtttgttgttgttgttgcagggagttgatg-tatgtgatccgatttcgtgttaacgattgatt 25899349  T
Q  188 cattcgccaaattatagacccgcttggtactcacaaacgt 227  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  25899350 cattcgccaaattatagacccgtttggtgctcacaaacgt 25899389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 3336090 - 3336236
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||| |||||||| |||||||||||||||||||| |||  || ||||| ||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  3336090 acatgagactatgtggacttgaaagagtcgttaatgcttgttgctgttgttgcatggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 3336188  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| || |  ||||||||||| ||| ||||    
T  3336189 attcgccaaattatagacccgttttgccctcacaaacgtctatcgtta 3336236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 33951810 - 33951956
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||| ||||||||||| |||  || ||||||||| ||||||  | |||||||||||| ||||||| ||||| |||     
T  33951810 acatgagactgtgtggacttgaaagagttgttaatgcttgttgccgttattgcagggagttgatgacacgtgatccgattttgtgttgaagatcg-atca 33951908  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| || |  ||||||||||| ||| ||||    
T  33951909 attcgccaaattatagacccgttttgccctcacaaacgtctatcgtta 33951956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 46028385 - 46028497
Alignment:
Q  97 actgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcca 196  Q
    ||||| |||||||||||||||||| |||||||| ||   || ||||| ||| ||||||||| |||||||||||| |||||||||||||  ||||||||||    
T  46028385 actgtatggactcgaaagagtcgtcaatgcttgttgtctttgttgcaaggagttgatggtacgtgatccgattttgtgttgacgatcggttcattcgcca 46028484  T
Q  197 aattatagacccg 209  Q
    || | ||||||||    
T  46028485 aactttagacccg 46028497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 22402359 - 22402223
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||| ||| |||||||||||||||||||| |||  || ||||||||| ||||||| | |||||| ||||| ||| ||| ||||| |||     
T  22402359 acatgagactgtgtgaacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatctgattttgtgatgaagatcg-atca 22402261  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacg 226  Q
    |||| ||||||||||||||||||| |  ||||||||||    
T  22402260 attcaccaaattatagacccgctttgccctcacaaacg 22402223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 637340 - 637237
Alignment:
Q  106 actcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattataga 205  Q
    |||||||| |||||| |||||||||||   || ||||||||| ||||||| | ||||| ||||||||||||||||||||  ||| ||| |||| | ||||    
T  637340 actcgaaatagtcgtcaatgcttgctgtagttgttgcagggagttgatggcaagtgattcgatttcgtgttgacgatcgattcactcgtcaaactttaga 637241  T
Q  206 cccg 209  Q
    ||||    
T  637240 cccg 637237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 28311655 - 28311722
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggta 157  Q
    |||||||||||| |||||||||||||||||||| |||||||||  ||  ||||||||| |||||||||    
T  28311655 acatgggactgtatggactcgaaagagtcgttattgcttgctgacatagttgcagggagttgatggta 28311722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 47330172 - 47330318
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||| | | |||||||||||||| ||| | |  ||  |||||||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  47330172 acatgagactgtgtggatttgcaagagtcgttaatggttgtttccgttgatgcagggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 47330270  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||| |||||||||||||| || |  ||||||||||| ||| ||||    
T  47330271 attcgctaaattatagacccgttttgccctcacaaacgtctatcgtta 47330318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 587283 - 587164
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||||| | |||||| |||||||| || |||||||| ||   || ||||||||| ||| ||||| ||||||||| ||||||||||||| ||  |||    
T  587283 acatgggactatatggacttgaaagagttgtcaatgcttgttgtcgttgttgcagggagttgctggtacgtgatccga-ttcgtgttgacgagcggttca 587185  T
Q  190 ttcgccaaattatagacccgc 210  Q
    |||| |||| | |||||||||    
T  587184 ttcgacaaactttagacccgc 587164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 25911734 - 25911854
Alignment:
Q  107 ctcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgccaaattataga 205  Q
    ||||||| || |||||||||||| ||   || |||||| || ||||| |||  ||||| |||||||||||||| |||| ||| |||  ||||||||||||    
T  25911734 ctcgaaatagccgttaatgcttgttgttgttgttgcagagagttgattgtacatgatctgatttcgtgttgaccatcg-atctattttccaaattataga 25911832  T
Q  206 cccgcttggtactcacaaacgt 227  Q
    |||| ||||| |||||||||||    
T  25911833 cccgtttggtgctcacaaacgt 25911854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 4545815 - 4545854
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttg 129  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  4545815 acatgggattgtgtggactagaaagagtcgttaatgcttg 4545854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 24094891 - 24094972
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttg 177  Q
    |||||| ||||||| |||||||||| ||||||||| |   || ||||||| | ||||||||| || || |||||||||||||    
T  24094891 gactgtttggactcaaaagagtcgtcaatgcttgcagtagttgttgcaggaagttgatggtaagtaattcgatttcgtgttg 24094972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 184
Target Start/End: Complemental strand, 20320 - 20226
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcg 184  Q
    ||||||||||||| |||||||||||||||||||||||||| ||   |||||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  20320 acatgggactgtgaggactcgaaagagtcgttaatgcttgttgttgtttttgcagggagttgatggtacgtgattcgatttcgtgttgacgatcg 20226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 39561037 - 39561182
Alignment:
Q  91 catgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-a 189  Q
    |||| ||||||||||||| |||||||||||||||||||| |||  || ||||||||| || |||| | |||||||||||| ||||||| ||||| ||| |    
T  39561037 catgagactgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagtttatggcacgtgatccgattttgtgttgaagatcg-atcaa 39561135  T
Q  190 ttcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  39561136 ttcgccaaattatagacccgctttgccctcacaaacgtctatcgtta 39561182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 16484899 - 16484753
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||||||||||||  ||||||| ||||||||||| |||  || ||||||||| ||||||| | |||||||||||| ||||||| ||||| |||     
T  16484899 acatgagactgtgtggacttaaaagagttgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg-atca 16484801  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  16484800 attcgccaaattatagacccgctttgccctcacaaacgtctatcgtta 16484753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 16044565 - 16044676
Alignment:
Q  105 gactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattatag 204  Q
    ||||||||| |||||||||| ||||||||  || ||||||||| |||||| || |||||||||||| |||||||||||||  |||||||||||| ||||     
T  16044565 gactcgaaatagtcgttaatacttgctgctgttgttgcagggagttgatgatacgtgatccgattttgtgttgacgatcgagtcattcgccaaactataa 16044664  T
Q  205 acccgcttggta 216  Q
    |||||| |||||    
T  16044665 acccgcctggta 16044676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 29731028 - 29731135
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||||| | |||||||||||||||||| |||||||| ||   || || |||||| ||||||||| ||||||||||||||||||||||||||  |||    
T  29731028 acatgggactctatggactcgaaagagtcgtcaatgcttgatgtccttgtttcagggagttgatggtacgtgatccgatttcgtgttgacgatcgtttca 29731127  T
Q  190 ttcgccaa 197  Q
    ||||||||    
T  29731128 ttcgccaa 29731135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 16482450 - 16482304
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  16482450 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 16482352  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||||||| |||| ||||   |||||||||| ||| ||||    
T  16482351 attcgccaaattataggcccgattggccatcacaaacgtctatcgtta 16482304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 39004835 - 39004689
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||| ||||||||||| |||  || ||||||||| ||||||| | ||||||| |||| ||||||| ||||| |||     
T  39004835 acatgagactgtgtggacttgaaagagttgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccaattttgtgttgaagatcg-atca 39004737  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||| | |||||||||||||||| | |  ||||||||||| ||| ||||    
T  39004736 atttgtcaaattatagacccgcgttgccctcacaaacgtctatcgtta 39004689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 40834994 - 40834876
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| || |||||||||| |||||||||||||||||||| |||  || ||||||||| ||||||| |  ||||||||||| ||| ||| ||||| |||     
T  40834994 acatgagagtgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacatgatccgattttgtgatgaagatcg-atca 40834896  T
Q  189 attcgccaaattatagaccc 208  Q
    ||||||||||||||||||||    
T  40834895 attcgccaaattatagaccc 40834876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 17110308 - 17110398
Alignment:
Q  104 ggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgc 194  Q
    ||||||||||||||||| |||||||| ||   || ||||||| | ||||||||| ||||||||||||||||||||||||||  ||||||||    
T  17110308 ggactcgaaagagtcgtcaatgcttgatgtctttgttgcaggaagttgatggtacgtgatccgatttcgtgttgacgatcgattcattcgc 17110398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 6764259 - 6764147
Alignment:
Q  95 ggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgc 194  Q
    ||||||| |||||||||||||||||| |||||||| |||     ||||||||| ||||||  | ||||||| ||||||||||||| ||||  ||||||||    
T  6764259 ggactgtatggactcgaaagagtcgtcaatgcttgttgc---cgttgcagggagttgatgacacgtgatccaatttcgtgttgacaatcgattcattcgc 6764163  T
Q  195 caaattatagacccgc 210  Q
    |||| | |||||||||    
T  6764162 caaactttagacccgc 6764147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 22494585 - 22494731
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||| |||| ||| |||||||||||||||||||| |||  || ||||||||| ||||| | |  ||||||||||  ||||||| ||||  |||     
T  22494585 acatgagactctgtgaacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatagcacatgatccgattctgtgttgaagatc-aatca 22494683  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||| |||||||||||||||| || |  ||||||||||| ||| ||||    
T  22494684 attcaccaaattatagacccgatttgccctcacaaacgtctatcgtta 22494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 8714358 - 8714290
Alignment:
Q  167 atttcgtgttgacgatcgcatcattcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||| |||||  |||||| |||||| ||| ||||||||||||||||||||||| ||| ||||    
T  8714358 atttcgtgttgatgatcgagtcattcaccaaat-ataaacccgcttggtactcacaaacgtctatcgtta 8714290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 43398170 - 43398133
Alignment:
Q  95 ggactgtgtggactcgaaagagtcgttaatgcttgctg 132  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  43398170 ggacggtgtgggctcgaaagagtcgttaatgcttgctg 43398133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 194782 - 194928
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  194782 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 194880  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||| ||||    
T  194881 attcgccaaattatagacccgattggccctcacaaacgtctatcgtta 194928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 18376108 - 18376214
Alignment:
Q  99 tgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaa 198  Q
    ||||||||||||||||||||||||||||||||||| ||| ||| ||| | |||||| ||||||||||||||| ||||||||| |||  | ||| ||||||    
T  18376108 tgtgtggactcgaaagagtcgttaatgcttgctgctattgttgtaggaagttgatgatatgtgatccgattttgtgttgacggtcgttttattggccaaa 18376207  T
Q  199 ttataga 205  Q
    |||||||    
T  18376208 ttataga 18376214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 23493310 - 23493182
Alignment:
Q  99 tgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaa 198  Q
    |||||||||||||||||||||||| |||||| ||   || ||||||||| |||||||||  |||| |||||| ||||||||  ||   ||||||||||||    
T  23493310 tgtgtggactcgaaagagtcgttattgcttgttgtcgttgttgcagggagttgatggtacatgattcgattttgtgttgacattcaattcattcgccaaa 23493211  T
Q  199 ttatagacccgcttggtactcacaaacgt 227  Q
    ||| ||| || ||||||||||||||||||    
T  23493210 ttaaagatccacttggtactcacaaacgt 23493182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 27020389 - 27020508
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| |||||||||||||  ||||||||||||||| ||| |||  || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  27020389 acatgagactgtgtggacttaaaagagtcgttaatgattgttgccgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 27020487  T
Q  189 attcgccaaattatagacccg 209  Q
    |||||||||||||||||||||    
T  27020488 attcgccaaattatagacccg 27020508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 5948140 - 5947994
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||| ||| ||   || ||||||||| ||||| | | ||||||| |||| ||||||| ||||| |||     
T  5948140 acatgagactgtgtggacttgaaagagtcgttaatgtttgttgtcgttgttgcagggagttgatagcacgtgatccaattttgtgttgaagatcg-atca 5948042  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||   |||||||||| ||| ||||    
T  5948041 attcgccaaattatagacccgattggccatcacaaacgtctatcgtta 5947994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 34851546 - 34851445
Alignment:
Q  97 actgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcca 196  Q
    ||||| |||||| ||||||||| | |||||||| ||   || ||||||||| ||||||||| |||||| |||||||||||||||||||  ||||||||||    
T  34851546 actgtatggacttgaaagagtcatcaatgcttgttgtctttgttgcagggagttgatggtacgtgatctgatttcgtgttgacgatcggttcattcgcca 34851447  T
Q  197 aa 198  Q
    ||    
T  34851446 aa 34851445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 37010574 - 37010451
Alignment:
Q  92 atgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcatt 191  Q
    |||||||||| || | |||||||||||||||||||||  | || || |||||  || ||||||||  ||||| ||||||||||||||||||||  |||||    
T  37010574 atgggactgtatgaattcgaaagagtcgttaatgcttttttcg-ttgttgcaaagagttgatggtgcgtgattcgatttcgtgttgacgatcgattcatt 37010476  T
Q  192 cgccaaattatagacccgcttggta 216  Q
    ||||||| | ||||||| |||||||    
T  37010475 cgccaaactttagacccacttggta 37010451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 1206619 - 1206722
Alignment:
Q  97 actgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcca 196  Q
    ||||| ||||||||||||||| ||  ||||||| ||   || ||||||||| ||||||||| |||||||| ||||||||| |||||||  ||||||||||    
T  1206619 actgtatggactcgaaagagttgtcgatgcttgttgtctttgttgcagggagttgatggtacgtgatccggtttcgtgttaacgatcggttcattcgcca 1206718  T
Q  197 aatt 200  Q
    ||||    
T  1206719 aatt 1206722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 39295874 - 39295737
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    ||||| |||||||||||||  |||| ||||||||||||||         ||||||||| ||||||  | |||||||||||| ||||||| ||||| ||||    
T  39295874 acatgagactgtgtggacttaaaagtgtcgttaatgcttg---------ttgcagggagttgatgacacgtgatccgattttgtgttgaagatcg-atca 39295785  T
Q  190 -ttcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
     ||||||||||||||||||||||| |  ||||||||||| ||| ||||    
T  39295784 attcgccaaattatagacccgctttgccctcacaaacgtctatcgtta 39295737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 29688887 - 29688781
Alignment:
Q  110 gaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaattatagacccg 209  Q
    |||||||||||||||| ||| ||   || ||||||||| ||||||||| ||||  ||||||||||||||||||||  |||||| ||||| | || ||||     
T  29688887 gaaagagtcgttaatgtttgttgtctttgttgcagggagttgatggtacgtgaatcgatttcgtgttgacgatcgtttcattcaccaaactttaaaccca 29688788  T
Q  210 cttggta 216  Q
    |||||||    
T  29688787 cttggta 29688781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 19327114 - 19327239
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    ||||||| | || |||||| ||||||||||||| |||||| ||  ||| | | ||||| |||||| || ||||  || |||||||||||||||||  |||    
T  19327114 acatgggtccgtatggacttgaaagagtcgttattgcttgttgtcattgtagtagggagttgatgatacgtgaatcgttttcgtgttgacgatcgattca 19327213  T
Q  190 ttcgccaaattatagacccgcttggt 215  Q
    ||| ||||| | ||||||||||||||    
T  19327214 ttcaccaaactttagacccgcttggt 19327239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 33287575 - 33287683
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||| ||| | ||||| ||||||||||||||||||||| ||   || ||||| | | |||||| |||||||||||||||  |||||||||||   |||    
T  33287575 acatggcactatatggacccgaaagagtcgttaatgcttgttgtcgttgttgcaagaagttgatgatatgtgatccgattttctgttgacgatcaattca 33287674  T
Q  190 ttcgccaaa 198  Q
    |||||||||    
T  33287675 ttcgccaaa 33287683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 36316352 - 36316485
Alignment:
Q  103 tggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca-ttcgccaaatta 201  Q
    |||||| ||||||||| |||||||||| |||  || ||||||||| ||||  | | | ||||| |||| ||||||| ||||| |||| ||||||||||||    
T  36316352 tggacttgaaagagtcattaatgcttgttgccgttgttgcagggagttgacagcacgcgatccaattttgtgttgaagatcg-atcaattcgccaaatta 36316450  T
Q  202 tagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||| || |  |||||||| |||||| ||||    
T  36316451 tagacccgatttgccctcacaaatgtttatcgtta 36316485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 36330561 - 36330694
Alignment:
Q  103 tggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca-ttcgccaaatta 201  Q
    |||||| ||||||||| |||||||||| |||  || ||||||||| ||||  | | | ||||| |||| ||||||| ||||| |||| ||||||||||||    
T  36330561 tggacttgaaagagtcattaatgcttgttgccgttgttgcagggagttgacagcacgcgatccaattttgtgttgaagatcg-atcaattcgccaaatta 36330659  T
Q  202 tagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||| || |  |||||||| |||||| ||||    
T  36330660 tagacccgatttgccctcacaaatgtttatcgtta 36330694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 19585911 - 19585867
Alignment:
Q  85 gttttacatgggactgtgtggactcgaaagagtcgttaatgcttg 129  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||    
T  19585911 gtttgacataggacggtgtggactcgaaagagtcgttaatgcttg 19585867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 18899025 - 18899171
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||   || ||||||||| ||||| | | |||||||||||| ||||||| ||||| |||     
T  18899025 acatgagactgtgtgaacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg-atca 18899123  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| ||||  ||||||||||| ||| ||||    
T  18899124 attcgccaaattatagacccgattggccctcacaaacgtctatcgtta 18899171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 9513289 - 9513408
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctg-cgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc 188  Q
    |||||||||||||||||||||||||||||   ||||||||||| |  || ||||||||| ||||||||| ||||||||| || |||||||||||||  ||    
T  9513289 acatgggactgtgtggactcgaaagagtcaccaatgcttgctgtctgttgttgcagggagttgatggtacgtgatccga-ttagtgttgacgatcgattc 9513387  T
Q  189 attcgccaaattatagacccg 209  Q
    |||||||||| | ||||||||    
T  9513388 attcgccaaactttagacccg 9513408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 720355 - 720466
Alignment:
Q  97 actgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcca 196  Q
    ||||| |||||||||| ||||||| |||||||| ||   || ||||||||| ||||| ||| ||||||||||||||||||||||||||  ||||||||||    
T  720355 actgtatggactcgaa-gagtcgtcaatgcttgttgtctttgttgcagggagttgatagtacgtgatccgatttcgtgttgacgatcggttcattcgcca 720453  T
Q  197 aattatagacccg 209  Q
    || | ||||||||    
T  720454 aactttagacccg 720466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 15559619 - 15559503
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||   || ||||| | | |||||| || ||||| | || | |||||||||||||  |||    
T  15559619 acatgggactgtgtggactcgaaagagtcgttaatgcttgttgtcgttgttgcatgaagttgatgatacgtgattcaatgttgtgttgacgatcgattca 15559520  T
Q  190 ttcgccaaattatagac 206  Q
    ||| |||||||||||||    
T  15559519 ttcaccaaattatagac 15559503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 1122326 - 1122473
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||||||| |||| |||| |||||||| ||||||||||||||  || ||||  |   |||||| || ||||| ||| |||||||| |||||||  |||    
T  1122326 acatgggactttgtgaactcaaaagagtcattaatgcttgctgccgttgttgcgtgacgttgatgatacgtgattcgacttcgtgttaacgatcgattca 1122425  T
Q  190 ttcgccaaa-ttatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||| ||||| |||||||||||||| |||||||||||||| ||| ||||    
T  1122426 ttctccaaaattatagacccgcttagtactcacaaacgtctatcgtta 1122473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 5474189 - 5474297
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    |||||| ||||| |||||||||||||||| | |||||||  ||   || || |||||| ||||||||| |||||||||||| |||||||||||||  |||    
T  5474189 acatggaactgtatggactcgaaagagtcatcaatgcttattgtcgttgttccagggagttgatggtacgtgatccgattttgtgttgacgatcgattca 5474288  T
Q  190 ttcgccaaa 198  Q
    |||||||||    
T  5474289 ttcgccaaa 5474297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 24316692 - 24316814
Alignment:
Q  87 tttacatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgca 186  Q
    ||||||||||||| | |||||| |||||||| || |||||||| ||   || ||||||||| ||| ||||| ||||||||| ||||||||||||| ||      
T  24316692 tttacatgggactttatggacttgaaagagttgtcaatgcttgttgtcgttgttgcagggagttgctggtacgtgatccga-ttcgtgttgacgagcggt 24316790  T
Q  187 tcattcgccaaattatagacccgc 210  Q
    ||||||| |||| |||||||||||    
T  24316791 tcattcgacaaactatagacccgc 24316814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 11121501 - 11121609
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    ||||| || ||| ||||||||||| |||| |||||||||| ||  ||| ||||| ||| || ||| ||  |||||||||||||||||||||||||  |||    
T  11121501 acatgagattgtatggactcgaaaaagtcattaatgcttgttgtcattgttgcaaggagttaatgatacttgatccgatttcgtgttgacgatcgattca 11121600  T
Q  190 ttcgccaaa 198  Q
    ||| |||||    
T  11121601 ttcaccaaa 11121609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 22514472 - 22514402
Alignment:
Q  139 ttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgccaaattatagacccg 209  Q
    ||||||||| ||||| | |||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  22514472 ttgcagggagttgatagcatgtgatccgattttgtgttgaagatcg-atcaattcgccaaattatagacccg 22514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 19430265 - 19430168
Alignment:
Q  139 ttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca-ttcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||| ||||| | | ||||||| |||| ||||||| ||||| |||| |||||||||||||||||||| || |  ||||||||||| ||| ||||    
T  19430265 ttgcagggagttgatagcacgtgatccaattttgtgttgaagatcg-atcaattcgccaaattatagacccgatttgccctcacaaacgtctatcgtta 19430168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 12528287 - 12528418
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcc 195  Q
    |||||||||||||||||||||||||||| || || ||   || ||| ||||| ||||||||||||||| |||||| |||||||| ||||  ||||| |||    
T  12528287 gactgtgtggactcgaaagagtcgttaacgcatgttgttgttgttgtagggagttgatggtatgtgatacgattttgtgttgaccatcgtttcatttgcc 12528386  T
Q  196 aaattatagacccgcttggtactcacaaacgt 227  Q
    ||||| |||||  | |||||||||||||||||    
T  12528387 aaattgtagacttgtttggtactcacaaacgt 12528418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 40267766 - 40267620
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| || |||||||||| |||||||||||||||||||| |||  || |||||||||  |||| | | |||||||||||| ||||||| ||||| |||     
T  40267766 acatgagattgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagctgatagcacgtgatccgattttgtgttgaagatcg-atca 40267668  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| || |  ||||||||||| ||| ||||    
T  40267667 attcgccaaattatagacccgatttgctctcacaaacgtctatcgtta 40267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 30750764 - 30750672
Alignment:
Q  103 tggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaaa 198  Q
    |||||||||||||||||| ||||||||||||     ||||||||| ||||||  ||||||||||||||||||||||||||||  ||||||||||||    
T  30750764 tggactcgaaagagtcgtcaatgcttgctgc---cgttgcagggagttgatgacatgtgatccgatttcgtgttgacgatcgattcattcgccaaa 30750672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 27545020 - 27544919
Alignment:
Q  98 ctgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgccaa 197  Q
    |||| ||||||||||||||||||   |||||||||   || ||||||||| ||||||||||||||||| |||||||||||||| |||  ||||| |||||    
T  27545020 ctgtatggactcgaaagagtcgtcgttgcttgctgtttttgttgcagggagttgatggtatgtgatcc-atttcgtgttgacggtcggttcatttgccaa 27544922  T
Q  198 att 200  Q
    |||    
T  27544921 att 27544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 3552366 - 3552420
Alignment:
Q  79 ccttatgttttacatgggactgtgtggactcgaaagagtcgttaatgcttgctgc 133  Q
    |||| ||||| ||||||||  ||||||||||||||||||||||||| ||||||||    
T  3552366 ccttttgtttgacatgggagggtgtggactcgaaagagtcgttaatacttgctgc 3552420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 4159842 - 4159971
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgcc 195  Q
    |||||||||||||||||||||| |||||||||| || |  ||  ||||  || || ||| |||||||||| |||| ||||| | || ||  ||||| |||    
T  4159842 gactgtgtggactcgaaagagttgttaatgcttactactgttggtgcaatgagttaatgatatgtgatccaattttgtgtttatgaccgtttcatttgcc 4159941  T
Q  196 aaattatagacccgcttggtactcacaaac 225  Q
    |||||||| ||||| || || |||||||||    
T  4159942 aaattataaacccgtttagtcctcacaaac 4159971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 4648072 - 4648161
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgac 179  Q
    ||||| |||||| |||||| ||||||||| |||||||||| |||  || ||||| ||  ||||||| | |||||||||||| | ||||||    
T  4648072 acatgagactgtatggacttgaaagagtcattaatgcttgttgccgttgttgcatggggttgatggcacgtgatccgattttgcgttgac 4648161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 9893973 - 9894080
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca 189  Q
    ||||| |||||| |||||||||||||| | | ||||  || ||  ||| ||||||||| ||||||| | |||||| || ||||||||||||||||  |||    
T  9893973 acatgagactgtttggactcgaaagaggcatcaatgagtgttgtcattgttgcagggagttgatggcacgtgatctga-ttcgtgttgacgatcgattca 9894071  T
Q  190 ttcgccaaa 198  Q
    |||| ||||    
T  9894072 ttcgacaaa 9894080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 1957 - 1817
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgc 194  Q
    ||||||||||||| |||||||||||||||| ||| |||  || |||| |||| ||||||| | |||||||||||| ||||  | ||||| ||| ||||||    
T  1957 gactgtgtggacttgaaagagtcgttaatgtttgttgccgttgttgccgggagttgatggcacgtgatccgattttgtgtgaaagatcg-atcaattcgc 1859  T
Q  195 caaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||| || |  ||||||||||| ||| ||||    
T  1858 caaattatagacccgatttgccctcacaaacgtctatcgtta 1817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 25833 - 25696
Alignment:
Q  99 tgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc-attcgccaa 197  Q
    |||||||||| |||||||||||||||| ||| |||  || |||| |||| ||||||| | |||||||||||| ||||  | ||||| ||| |||||||||    
T  25833 tgtgtggacttgaaagagtcgttaatgtttgttgccgttgttgccgggagttgatggcacgtgatccgattttgtgtgaaagatcg-atcaattcgccaa 25735  T
Q  198 attatagacccgcttggtactcacaaacgtttattgtta 236  Q
    |||||||||||| || |  ||||||||||| ||| ||||    
T  25734 attatagacccgatttgccctcacaaacgtctatcgtta 25696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 9341 - 9201
Alignment:
Q  96 gactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatca-ttcgc 194  Q
    ||||||||||||| |||||||| ||||||| ||| |||  || |||| |||| | ||||| | |||| ||||||| ||||  | ||||| |||| |||||    
T  9341 gactgtgtggacttgaaagagttgttaatgtttgttgccgttgttgccgggagtcgatggcacgtgacccgattttgtgtgaaagatcg-atcaattcgc 9243  T
Q  195 caaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||| || |  ||||||||||| ||| ||||    
T  9242 caaattatagacccgatttgccctcacaaacgtctatcgtta 9201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 4166 - 4312
Alignment:
Q  90 acatgggactgtgtggactcgaaagagtcgttaatgcttgctgcgatttttgcagggaattgatggtatgtgatccgatttcgtgttgacgatcgcatc- 188  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||    | ||| ||||| ||||| | | |||||||||||| || |||| ||||| |||     
T  4166 acatgagactgtgtggacttgaaagagtcgttaatgcttgttgacgctgttgtagggagttgatagcacgtgatccgattttgtattgaagatcg-atca 4264  T
Q  189 attcgccaaattatagacccgcttggtactcacaaacgtttattgtta 236  Q
    ||||||||||||||||||||| || |  ||||||||||| ||| ||||    
T  4265 attcgccaaattatagacccgatttgccctcacaaacgtctatcgtta 4312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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