View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_260 (Length: 250)
Name: NF10140A_low_260
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_260 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 19601500 - 19601266
Alignment:
| Q |
5 |
gacatcaggggaggcgagtgtaattttccctattataaattcacataagctatcaagtccatcaagccccaaggatttgtctagggtgaggagtttgtgt |
104 |
Q |
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| T |
19601500 |
gacatcagggaaggcgagtgtaattttccctattataaattcacataagctatcaagtccatcaagccccaaggatttgtctagggtgaggagtttgtgt |
19601401 |
T |
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| Q |
105 |
agctaatatcaaacagggttttaaattttggttgcaaatgcggctactacaatcacagacattgctactggtgtggcatg-aannnnnnnnnattagcgt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
19601400 |
agctaatatcaaacagggttttaaattttggttgcaaatgcggctactacaatcacagacattgctactggtgtggcatgcatttattttttattagcgt |
19601301 |
T |
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| Q |
204 |
cgtcaaccattataatttatcacttatcttatatt |
238 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
19601300 |
cgtcaaccattataatttatcacttatcttatatt |
19601266 |
T |
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