View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_264 (Length: 250)
Name: NF10140A_low_264
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_264 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 39182325 - 39182551
Alignment:
| Q |
8 |
cagatcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtga |
107 |
Q |
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| T |
39182325 |
cagatcagtagtaatattcaacttcgccggctgcaaaaaaaaaaaaaaaaatataggatgcattaaaacttgtgtatccattgcaaccaaacacaagtga |
39182424 |
T |
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| Q |
108 |
aagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgga |
207 |
Q |
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| T |
39182425 |
aagatgtttgtttaaagcagctttggctgtaagtc-ttgctatttcatctactagaaaatcaaagaattgaaacctataagaactcaaaagtcttgtgaa |
39182523 |
T |
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| Q |
208 |
gtctaacctccaagatttttgccgcgat |
235 |
Q |
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| T |
39182524 |
gtctaacctccaagatttttgccgcgat |
39182551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 2103243 - 2103088
Alignment:
| Q |
82 |
tatccattgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtcattgctatttcatctactagaaaatcaaagaattgaaac |
181 |
Q |
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| T |
2103243 |
tatccattgcaaccaaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaac |
2103144 |
T |
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| Q |
182 |
ctataagaactc--aaaagtcttgtggagtctaacctccaagatttttgccgcgat |
235 |
Q |
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| T |
2103143 |
caataagaactcagaaaagtcttgtgaagtctaacctccaagatttttgccacgat |
2103088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 2103370 - 2103302
Alignment:
| Q |
11 |
atcagtagtaatattcaacttcgccggctgcaagaaaagaaaagaaaatataggatgcattaaaacttgtgt |
82 |
Q |
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| T |
2103370 |
atcagtagtaatattcaacttcgccggctgca--aaaagaaaa-aaaatatagaatgcattaaaacttgtgt |
2103302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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