View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10140A_low_265 (Length: 250)
Name: NF10140A_low_265
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_265 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 41405396 - 41405477
Alignment:
| Q |
159 |
ccaaatgaacaaattgctgagcttattaagcaatacaaaggatacaatccctacatgactcaatactatcatgttcagagtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41405396 |
ccaaatgaacaaattgctgagcttattaagcaatacaaaggatacaatccctacatgactcaatactatcatgttcagagtg |
41405477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 41405269 - 41405337
Alignment:
| Q |
14 |
agaccctgttgatgttgtgagcaaattgagaaaaacttggcacacagaaattttaacggttgggccggc |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41405269 |
agaccctgttgatgttgtgagcaaattgagaaaaacttggcacacagaaattttaacggttgggccggc |
41405337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University