View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_267 (Length: 250)

Name: NF10140A_low_267
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_267
NF10140A_low_267
[»] chr8 (8 HSPs)
chr8 (6-205)||(61451-61650)
chr8 (6-202)||(1365829-1366025)
chr8 (75-205)||(39255673-39255803)
chr8 (75-203)||(44751607-44751735)
chr8 (87-141)||(26492093-26492147)
chr8 (75-112)||(12351828-12351865)
chr8 (168-202)||(62254-62288)
chr8 (168-202)||(39254787-39254821)
[»] chr4 (12 HSPs)
chr4 (6-202)||(28683508-28683703)
chr4 (6-203)||(47198604-47198801)
chr4 (75-203)||(55159988-55160115)
chr4 (76-159)||(43737636-43737719)
chr4 (149-202)||(25371540-25371593)
chr4 (165-204)||(28684243-28684282)
chr4 (149-196)||(55159186-55159233)
chr4 (168-200)||(3848592-3848624)
chr4 (140-195)||(37275095-37275150)
chr4 (168-202)||(36865731-36865765)
chr4 (154-202)||(38694954-38695002)
chr4 (168-204)||(47199409-47199445)
[»] chr5 (5 HSPs)
chr5 (6-202)||(13655512-13655708)
chr5 (76-141)||(4909593-4909658)
chr5 (168-203)||(13654932-13654967)
chr5 (168-197)||(39167454-39167483)
chr5 (168-204)||(8204118-8204154)
[»] chr2 (4 HSPs)
chr2 (75-203)||(5276464-5276592)
chr2 (170-205)||(45139689-45139724)
chr2 (168-206)||(21471013-21471051)
chr2 (168-204)||(14574013-14574049)
[»] chr1 (13 HSPs)
chr1 (75-202)||(37874064-37874191)
chr1 (75-203)||(48869768-48869896)
chr1 (75-202)||(35615767-35615893)
chr1 (75-189)||(17496083-17496197)
chr1 (168-202)||(8560839-8560873)
chr1 (154-202)||(48971705-48971753)
chr1 (154-206)||(48972445-48972497)
chr1 (168-203)||(51987826-51987861)
chr1 (149-203)||(35616770-35616824)
chr1 (168-206)||(51974433-51974471)
chr1 (154-202)||(193850-193898)
chr1 (154-202)||(23440617-23440665)
chr1 (170-202)||(51988480-51988512)
[»] chr6 (4 HSPs)
chr6 (75-201)||(9573636-9573762)
chr6 (165-202)||(7531829-7531866)
chr6 (170-203)||(7532456-7532489)
chr6 (154-202)||(15083318-15083366)
[»] chr3 (6 HSPs)
chr3 (75-202)||(17226968-17227095)
chr3 (149-202)||(17227943-17227996)
chr3 (165-202)||(19132563-19132600)
chr3 (85-141)||(4486555-4486611)
chr3 (168-204)||(36750451-36750487)
chr3 (168-208)||(41755493-41755533)
[»] scaffold1037 (1 HSPs)
scaffold1037 (76-197)||(2034-2155)
[»] scaffold1031 (1 HSPs)
scaffold1031 (76-197)||(2152-2273)
[»] chr7 (6 HSPs)
chr7 (165-201)||(42455036-42455072)
chr7 (154-197)||(7677422-7677465)
chr7 (92-143)||(23683461-23683512)
chr7 (97-143)||(19737901-19737947)
chr7 (168-205)||(41194510-41194547)
chr7 (168-204)||(38778852-38778888)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 61650 - 61451
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61650 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 61551  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||| |||||||    
T  61550 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacctaa 61451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 1366025 - 1365829
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1366025 agaaggaacataagaaggacaaagataagaaaaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 1365926  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| || |||||||||||||||||||||||||||||| ||||    
T  1365925 agactattgtaacagtgtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 39255673 - 39255803
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  ||| || |||||||    
T  39255673 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattaggaaagactttcccatggtgggaaaga 39255772  T
Q  175 agtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||| |||||||| ||||||| |||||||    
T  39255773 agtctcatttcccaagttaaatgccacctaa 39255803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 44751735 - 44751607
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  |||  | |||||||    
T  44751735 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattaaaaaagactttcccatgatgggaaaga 44751636  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||| ||||||| |||||    
T  44751635 agtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 26492147 - 26492093
Alignment:
Q  87 ataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 141  Q
    |||| ||||||||||||||||||||||||||||||||  ||||| | ||||||||    
T  26492147 ataaaaatctagtgttgagagactattgtaatagtgtactctttatgtgatccaa 26492093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 12351828 - 12351865
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactat 112  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12351828 gaagatagtaagataaaaatctagtgttgagagactat 12351865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 62254 - 62288
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||| ||||||||||||||||    
T  62254 ggaaagaagtctcctttctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 39254821 - 39254787
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||||||||||||||| ||||    
T  39254821 ggaaagaagtctcctttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 28683703 - 28683508
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28683703 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 28683604  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||| ||||||||||||| ||||    
T  28683603 agactattgtaatagtgcgttctttgtatgatccaatggttagaaaa-actttttcataatgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 47198801 - 47198604
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  47198801 agaatgaacataagaaagacaaagataagaagaaaaaggtggaaaagaatccaagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 47198702  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||||    
T  47198701 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 55159988 - 55160115
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||| ||  |||| |    
T  55159988 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttatatgatccaatgattagaaaagactttcccatggtgagaaa-a 55160086  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||||||||||| |||||    
T  55160087 agtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 43737719 - 43737636
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttt 159  Q
    |||||||||| |||| |||| |||||| |||| |||| ||||||||||||||||| |||||||||||  ||| |||| ||||||    
T  43737719 aagatagtaatataaaaatccagtgttaagaggctatagtaatagtgtgttctttatatgatccaataattataaaacactttt 43737636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 25371540 - 25371593
Alignment:
Q  149 aaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||| ||||| |||| || |||||||||||||||||||||||||||||||||||    
T  25371540 aaaatactttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 28684243 - 28684282
Alignment:
Q  165 gtaggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  28684243 gtaggaaaaaagtctcctttcccaaattaaatgtcaccta 28684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 55159233 - 55159186
Alignment:
Q  149 aaaagactttttcattgtaggaaagaagtctcctttcccaaattaaat 196  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  55159233 aaaagactttcccatggtaggaaagaagtctcctttcccaaattaaat 55159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 3848592 - 3848624
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtca 200  Q
    |||||||||||||||||||||||||||||||||    
T  3848592 ggaaagaagtctcctttcccaaattaaatgtca 3848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 37275150 - 37275095
Alignment:
Q  140 aatggttagaaaagactttttcattgtaggaaagaagtctcctttcccaaattaaa 195  Q
    |||||||  |||| ||||| |||| || ||||||||||||||||||||||||||||    
T  37275150 aatggtttaaaaaaactttctcatggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 36865731 - 36865765
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||| ||||||||||||||||||||||||||    
T  36865731 ggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 38694954 - 38695002
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||| || |||||||| ||||||||||||||||||||| ||||    
T  38694954 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 47199409 - 47199445
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  47199409 ggaaagaagtctcttttcccaaattaaatgccaccta 47199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 13655512 - 13655708
Alignment:
Q  6 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcacagtttcaatggttagtgaagatagtaagataagaatctagtgttgag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||  |||||||||    
T  13655512 agaaggaacataagaaggacaaagataagaagaaaaaggtgggaaagaatcgcaattttaatggttagtgaagatagtaagataagaattcagtgttgag 13655611  T
Q  106 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  | ||||||||||||| |||||||||||||||| ||||    
T  13655612 agactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 4909593 - 4909658
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 141  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  4909593 aagatggtgagataaaaatctagtgttgagagactattgtaatagtgtgctctttatgtgatccaa 4909658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 13654967 - 13654932
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||||||||||||||||||||||||    
T  13654967 ggaaagaagtctcctttcccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 39167454 - 39167483
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatg 197  Q
    ||||||||||||||||||||||||||||||    
T  39167454 ggaaagaagtctcctttcccaaattaaatg 39167483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 8204154 - 8204118
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  8204154 ggaaagaactctcctttcccaaattaaatggcaccta 8204118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 5276592 - 5276464
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||  ||| || |||||||    
T  5276592 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcccatggtgggaaaga 5276493  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||| ||||||| |||||    
T  5276492 agtctcctttcccaagttaaatgccacct 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 45139724 - 45139689
Alignment:
Q  170 aaagaagtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||||||||||||||||||||||||| |||||||    
T  45139724 aaagaagtctcctttcccaaattaaatgccacctaa 45139689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 21471051 - 21471013
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  21471051 ggaaagaactctcctttcccaaattaaatggcacctaaa 21471013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 14574013 - 14574049
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  14574013 ggaaagaactctcctttcccaaattaaatggcaccta 14574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 37874191 - 37874064
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||  ||| || |||||||    
T  37874191 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagtaaagactttcccatggtgggaaaga 37874092  T
Q  175 agtctcctttcccaaattaaatgtcacc 202  Q
    |||||| |||||||| ||||||||||||    
T  37874091 agtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 48869896 - 48869768
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  ||| || | |||||    
T  48869896 gaagatagtatgataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagaaaagattttcccatggtggaaaaga 48869797  T
Q  175 agtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||||||| |||||||||||||    
T  48869796 agtctcctttcccaagttaaatgtcacct 48869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 35615893 - 35615767
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||  ||| || |||||||    
T  35615893 gaagatagtaagataaaaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatgattagaaaaga-attcccatggtgggaaaga 35615795  T
Q  175 agtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||| |||| ||||||| ||||    
T  35615794 agtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 17496083 - 17496197
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||  || || | | |||    
T  17496083 gaagatagtaagataataatctagtgtggagagactattgtaatagtgtgttctttatatgatccaatgattaaaaaacacttttctatggtggaataga 17496182  T
Q  175 agtctcctttcccaa 189  Q
    |||||||||||||||    
T  17496183 agtctcctttcccaa 17496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 8560873 - 8560839
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||||||||||||||||||||    
T  8560873 ggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 48971753 - 48971705
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  48971753 actttctcattgtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 48972445 - 48972497
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||| ||| || |||||||| ||||||||||||||||||||| ||||||||    
T  48972445 acttttccatggtgggaaagaactctcctttcccaaattaaatggcacctaaa 48972497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 51987861 - 51987826
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||||||||||||||||||||||||| |||||    
T  51987861 ggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 35616770 - 35616824
Alignment:
Q  149 aaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacct 203  Q
    ||||||||||  ||| || |||||||||||||||||||||| ||||||| |||||    
T  35616770 aaaagactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 35616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 51974471 - 51974433
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacctaaa 206  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  51974471 ggaaagaactctcctttcccaaattaaatggcacctaaa 51974433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 193898 - 193850
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||| || |||||||| ||||||||||||||||||||| ||||    
T  193898 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 23440665 - 23440617
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||| ||| || |||||||| ||||||||||||||||||||| ||||    
T  23440665 acttttccatagttggaaagaactctcctttcccaaattaaatggcacc 23440617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 51988480 - 51988512
Alignment:
Q  170 aaagaagtctcctttcccaaattaaatgtcacc 202  Q
    |||||||||||||||||||||||||||| ||||    
T  51988480 aaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 9573762 - 9573636
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||   || || | |||||    
T  9573762 gaagatagtaagataaaaatctagtgttgagagactattgtaacagtgtgttctttgtatgatccaatgattagaaaagactttcctatagtggaaaaga 9573663  T
Q  175 agtctcctttcccaaattaaatgtcac 201  Q
    |||||| |||||||| |||||||||||    
T  9573662 agtctcatttcccaagttaaatgtcac 9573636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 7531866 - 7531829
Alignment:
Q  165 gtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  7531866 gtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 7532456 - 7532489
Alignment:
Q  170 aaagaagtctcctttcccaaattaaatgtcacct 203  Q
    |||||||||||||||||||||||||||| |||||    
T  7532456 aaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 15083318 - 15083366
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||| |||| || |||||||| ||||||||||||||||||||| ||||    
T  15083318 actttctcatggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 17227095 - 17226968
Alignment:
Q  75 gaagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaaga 174  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||  ||| || |||||||    
T  17227095 gaagataggaagataaaaatctagtgttgagggactattgtaatagtgtgttctttgtatgattcattggttagaaaagattttcccatggtgggaaaga 17226996  T
Q  175 agtctcctttcccaaattaaatgtcacc 202  Q
    | ||||||||||||||||||||| ||||    
T  17226995 aatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 17227943 - 17227996
Alignment:
Q  149 aaaagactttttcattgtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  17227943 aaaagactttttcatggtgggaaagaagtctcctttcccaaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 19132600 - 19132563
Alignment:
Q  165 gtaggaaagaagtctcctttcccaaattaaatgtcacc 202  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  19132600 gtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 4486555 - 4486611
Alignment:
Q  85 agataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaa 141  Q
    |||||| ||| ||||||| ||||||||||||||||||||| | ||| | ||||||||    
T  4486555 agataaaaatttagtgtttagagactattgtaatagtgtgctttttatgtgatccaa 4486611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 36750451 - 36750487
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  36750451 ggaaagaactctcctttcccaaattaaatggcaccta 36750487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 41755533 - 41755493
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacctaaatt 208  Q
    ||||| || ||||||||||||||||||||| ||||||||||    
T  41755533 ggaaaaaactctcctttcccaaattaaatgacacctaaatt 41755493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 2155 - 2034
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaa 175  Q
    |||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||  |||||| ||||| ||| |||| |||||| ||| || ||||||||    
T  2155 aagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgattcaatgattaaaaaacacttttccatagtgggaaagaa 2056  T
Q  176 gtctcctttcccaaattaaatg 197  Q
    || || |||||||  |||||||    
T  2055 gtatcatttcccaggttaaatg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 2273 - 2152
Alignment:
Q  76 aagatagtaagataagaatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatggttagaaaagactttttcattgtaggaaagaa 175  Q
    |||||||||| |||| |||| |||||| ||||||||| ||||||||||||||||  |||||| ||||| ||| |||| |||||| ||| || ||||||||    
T  2273 aagatagtaatataaaaatccagtgttaagagactatagtaatagtgtgttcttcatatgattcaatgattaaaaaacacttttccatagtgggaaagaa 2174  T
Q  176 gtctcctttcccaaattaaatg 197  Q
    || || |||||||  |||||||    
T  2173 gtatcatttcccaggttaaatg 2152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 42455072 - 42455036
Alignment:
Q  165 gtaggaaagaagtctcctttcccaaattaaatgtcac 201  Q
    |||| ||||||||||||||||||||||||||||||||    
T  42455072 gtagaaaagaagtctcctttcccaaattaaatgtcac 42455036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 7677465 - 7677422
Alignment:
Q  154 actttttcattgtaggaaagaagtctcctttcccaaattaaatg 197  Q
    |||||||||| || |||||||| |||||||||||||||||||||    
T  7677465 actttttcatggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 23683512 - 23683461
Alignment:
Q  92 aatctagtgttgagagactattgtaatagtgtgttctttgtatgatccaatg 143  Q
    |||| |||||||| |||||||||||||| ||||||| || ||||||||||||    
T  23683512 aatcaagtgttgaaagactattgtaataatgtgttccttatatgatccaatg 23683461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 19737901 - 19737947
Alignment:
Q  97 agtgttgagagactattgtaatagtgtgttctttgtatgatccaatg 143  Q
    ||||||||||||||||||||||||||||||  || ||||||| ||||    
T  19737901 agtgttgagagactattgtaatagtgtgtttcttatatgatctaatg 19737947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 41194547 - 41194510
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcacctaa 205  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  41194547 ggaaagaactctcctttcccaaattaaatggcacctaa 41194510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 38778888 - 38778852
Alignment:
Q  168 ggaaagaagtctcctttcccaaattaaatgtcaccta 204  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  38778888 ggaaagaactctcctttcccaaattaaatggcaccta 38778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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