View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10140A_low_268 (Length: 250)

Name: NF10140A_low_268
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10140A_low_268
NF10140A_low_268
[»] chr4 (1 HSPs)
chr4 (16-243)||(31170887-31171114)
[»] chr2 (1 HSPs)
chr2 (16-86)||(35224424-35224494)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 31171114 - 31170887
Alignment:
Q  16 tggacatcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttcctttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171114 tggacatcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggccaaagtcataaaagtttatttcttcctttt 31171015  T
Q  116 ccctccttaagatctctgttcgtaagataatttcataatgtcgtannnnnnncctttctgcacaatggctactaatttatgacaaacaattttgagcaaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  31171014 ccctccttaagatctctgttcgtaagataatttcataatgtcgtattttttccctttctgctcgatggctactaatttatgacaaacaattttgagcaaa 31170915  T
Q  216 tatcacttgctttttaacttttcatact 243  Q
    ||||||||||||||||||||||||||||    
T  31170914 tatcacttgctttttaacttttcatact 31170887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 35224494 - 35224424
Alignment:
Q  16 tggacatcagctgcacaactatcattacttgaagacgaaatgcgccgtatagaaagagtcaatgtaaggcc 86  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  35224494 tggacatctgctgcacagctatcattactcgaagatgaaatgcgccgtatagaaagagtcaatgtaaggcc 35224424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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