View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10140A_low_269 (Length: 249)
Name: NF10140A_low_269
Description: NF10140A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10140A_low_269 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35742832 - 35742596
Alignment:
| Q |
1 |
gaagagtacgaggatctcgaagatctcgaagatccagtaacttataaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtc |
100 |
Q |
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| T |
35742832 |
gaagagtacgaggatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtc |
35742733 |
T |
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| Q |
101 |
ttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgt |
200 |
Q |
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| T |
35742732 |
ttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttgt |
35742633 |
T |
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| Q |
201 |
gaaccacgaaacacatcccgatcaaatgctatatatt |
237 |
Q |
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| T |
35742632 |
gaaccacgaaacacatcccgatcaaatgctatatatt |
35742596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 35749153 - 35748963
Alignment:
| Q |
45 |
taaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacac |
144 |
Q |
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|||||| ||||| |||||||| ||||| ||| | || |||||| |||||||| |||||||||| || |||||||||| || |||||| ||||||| | |
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| T |
35749153 |
taaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattc |
35749054 |
T |
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| Q |
145 |
ctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatata |
235 |
Q |
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| T |
35749053 |
ctcagtacgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatata |
35748963 |
T |
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